unable to run starBeast

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石勇

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Aug 31, 2014, 11:31:17 PM8/31/14
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Dear all.
   Why can't I run starbeast? 
   Did I setting something wrong?
   Any suggestion would be appreciated.

PS:

 WARNING: StateNode (Tree.t:Species1) found that has no effect on posterior!

 Warning: state contains a node Tree.t:Species1 for which there is no operator.
 Start likelihood: NaN 
 P(posterior) = NaN (was NaN)
P(speciescoalescent) = NaN (was NaN)
P(SpeciesTreePopSize.Species) = NaN (was NaN)
P(treePrior.t:A36_HAP) = NaN (was NaN)
P(treePrior.t:A47_hap) = NaN (was NaN)
P(treePrior.t:H38_Hap) = NaN (was NaN)
P(treePrior.t:H7_Hap) = NaN (was NaN)
P(treePrior.t:S169_Hap) = NaN (was NaN)
P(treePrior.t:S177_Hap) = NaN (was NaN)
P(treePrior.t:S2_Hap) = NaN (was NaN)
P(treePrior.t:S51_Hap) = NaN (was NaN)
P(treePrior.t:S88_Hap) = NaN (was NaN)
P(prior) = NaN (was NaN)
P(CoalescentConstant.t:Species) = -110.64680264503696 (was NaN)
P(ClockPrior.c:A47_hap) = -1.4189385332046727 (was NaN)
P(ClockPrior.c:H38_Hap) = -1.4189385332046727 (was NaN)
P(ClockPrior.c:H7_Hap) = -1.4189385332046727 (was NaN)
P(ClockPrior.c:S169_Hap) = -1.4189385332046727 (was NaN)
P(ClockPrior.c:S177_Hap) = -1.4189385332046727 (was NaN)
P(ClockPrior.c:S2_Hap) = -1.4189385332046727 (was NaN)
P(ClockPrior.c:S51_Hap) = -1.4189385332046727 (was NaN)
P(ClockPrior.c:S88_Hap) = -1.4189385332046727 (was NaN)
P(GammaShapePrior.s:A36_HAP) = -1.0 (was NaN)
P(GammaShapePrior.s:A47_hap) = -1.0 (was NaN)
P(GammaShapePrior.s:H7_Hap) = -1.0 (was NaN)
P(GammaShapePrior.s:S177_Hap) = -1.0 (was NaN)
P(MutationRatePrior.s:A36_HAP) = -1.4620820845188824 (was NaN)
P(MutationRatePrior.s:A47_hap) = -1.4620820845188824 (was NaN)
P(MutationRatePrior.s:H38_Hap) = -1.4620820845188824 (was NaN)
P(MutationRatePrior.s:H7_Hap) = -1.4620820845188824 (was NaN)
P(MutationRatePrior.s:S169_Hap) = -1.4620820845188824 (was NaN)
P(MutationRatePrior.s:S177_Hap) = -1.4620820845188824 (was NaN)
P(MutationRatePrior.s:S2_Hap) = -1.4620820845188824 (was NaN)
P(MutationRatePrior.s:S51_Hap) = -1.4620820845188824 (was NaN)
P(MutationRatePrior.s:S88_Hap) = -1.4620820845188824 (was NaN)
P(popMean.prior) = 0.0 (was NaN)
P(PopSizePrior.t:Species) = 1.2039728043259361 (was NaN)
P(likelihood) = NaN (was NaN)
P(treeLikelihood.A36_HAP) = NaN (was NaN)
P(treeLikelihood.A47_hap) = NaN (was NaN)
P(treeLikelihood.H38_Hap) = NaN (was NaN)
P(treeLikelihood.H7_Hap) = NaN (was NaN)
P(treeLikelihood.S169_Hap) = NaN (was NaN)
P(treeLikelihood.S177_Hap) = NaN (was NaN)
P(treeLikelihood.S2_Hap) = NaN (was NaN)
P(treeLikelihood.S51_Hap) = NaN (was NaN)
P(treeLikelihood.S88_Hap) = NaN (was NaN)
java.lang.Exception: Could not find a proper state to initialise. Perhaps try another seed.
at beast.core.MCMC.run(Unknown Source)
at beast.app.BeastMCMC.run(Unknown Source)
at beast.app.beastapp.BeastMain.<init>(Unknown Source)
at beast.app.beastapp.BeastMain.main(Unknown Source)

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