[apbs-users] help

[peyman fahimi]

Dear all

I am student of physics from Iran.

I want a complete data list of potential values around DNA in terms of distance. In fact, I want to calculate the probability of proton tunneling in spontaneous mutation of DNA.

Is it possible to help and make this data available to me?

 

Best regards

P.Fahimi

[Nathan Baker]

Hello --

After running APBS on a DNA PQR file, you should be able to use the multivalue program distributed with APBS (in the tools directory) to evaluate the electrostatic potential at different locations around DNA.  You can perform radial averaging of the resulting electrostatic potential values to generate the plot you've requested.

Please let me know if you have any further questions.

Sincerely,

Nathan Baker

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