They should. 4.3 and 4.4 are fairly compatible in terms of binaries and kernels. It'd probably be better however to bring up TaintDroid into 4.4. The only repos changed were dalvik, libcore, frameworks/base, frameworks/native, frameworks/opt/telephony, system/vold, and system/core. Some of those you may be able to pull automatically with git pull and have everything merge nicely; others you may have to do manually or deal with conflicts, but it's a better solution than 4.3 in my opinion.