UR and postgres

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Aaron Mangum

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Jun 27, 2016, 3:02:55 PM6/27/16
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Hi, I'm trying to set up the universal recommender with postgres. 
These are the relevant parts of my pio-env.sh:

POSTGRES_JDBC_DRIVER=$PIO_HOME/lib/postgresql-9.4.1208.jar

# ES_CONF_DIR: You must configure this if you have advanced configuration for
#              your Elasticsearch setup.
# ES_CONF_DIR=/opt/elasticsearch


# Filesystem paths where PredictionIO uses as block storage.
PIO_FS_BASEDIR=$HOME/.pio_store
PIO_FS_ENGINESDIR=$PIO_FS_BASEDIR/engines
PIO_FS_TMPDIR=$PIO_FS_BASEDIR/tmp

# PredictionIO Storage Configuration
#
# This section controls programs that make use of PredictionIO's built-in
# storage facilities. Default values are shown below.
#
# For more information on storage configuration please refer to

# Storage Repositories

# Default is to use PostgreSQL
PIO_STORAGE_REPOSITORIES_METADATA_NAME=pio_meta
PIO_STORAGE_REPOSITORIES_METADATA_SOURCE=ELASTICSEARCH

PIO_STORAGE_REPOSITORIES_EVENTDATA_NAME=pio_event
PIO_STORAGE_REPOSITORIES_EVENTDATA_SOURCE=PGSQL

PIO_STORAGE_REPOSITORIES_MODELDATA_NAME=pio_model
PIO_STORAGE_REPOSITORIES_MODELDATA_SOURCE=LOCALFS

# Storage Data Sources

# PostgreSQL Default Settings
# Please change "pio" to your database name in PIO_STORAGE_SOURCES_PGSQL_URL
# Please change PIO_STORAGE_SOURCES_PGSQL_USERNAME and
# PIO_STORAGE_SOURCES_PGSQL_PASSWORD accordingly
PIO_STORAGE_SOURCES_PGSQL_TYPE=jdbc



But, I get the following error when running pio train.

[WARN] [TaskSetManager] Lost task 0.0 in stage 6.0 (TID 21, localhost): java.sql.BatchUpdateException: Batch entry 0 INSERT INTO pio_event_1 (id,event,entityType,entityId,targetEntityType,targetEntityId,properties,eventTime,eventTimeZone,tags,prId,creationTime,creationTimeZone) VALUES ('7067bbb81ba84086aeb2d70a8c572f04','view','user','53f208fd302a12e8e5000017','item','gonsie',NULL,'2015-3-6 13:52:33.032000 +0:0:0','UTC',NULL,NULL,'2015-3-6 13:52:33.032000 +0:0:0','UTC') was aborted.  Call getNextException to see the cause.
at org.postgresql.jdbc.BatchResultHandler.handleError(BatchResultHandler.java:136)
at org.postgresql.core.v3.QueryExecutorImpl$1.handleError(QueryExecutorImpl.java:419)
at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:308)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2004)
at org.postgresql.core.v3.QueryExecutorImpl.flushIfDeadlockRisk(QueryExecutorImpl.java:1187)
at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1212)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:351)
at org.postgresql.jdbc.PgStatement.executeBatch(PgStatement.java:1019)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$.savePartition(JdbcUtils.scala:215)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$saveTable$1.apply(JdbcUtils.scala:277)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$saveTable$1.apply(JdbcUtils.scala:276)
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1$$anonfun$apply$33.apply(RDD.scala:920)
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1$$anonfun$apply$33.apply(RDD.scala:920)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

[ERROR] [Executor] Exception in task 1.0 in stage 6.0 (TID 22)
[ERROR] [TaskSetManager] Task 0 in stage 6.0 failed 1 times; aborting job
[WARN] [TaskSetManager] Lost task 1.0 in stage 6.0 (TID 22, localhost): java.sql.BatchUpdateException: Batch entry 0 INSERT INTO pio_event_1 (id,event,entityType,entityId,targetEntityType,targetEntityId,properties,eventTime,eventTimeZone,tags,prId,creationTime,creationTimeZone) VALUES ('16ec8e93eca74b51b5c6fb13ef069f93','view','user','54e3ce1174756e4b0ef60c00','item','stackoverflow_1636586',NULL,'2015-3-6 17:5:31.709000 +0:0:0','UTC',NULL,NULL,'2015-3-6 17:5:31.709000 +0:0:0','UTC') was aborted.  Call getNextException to see the cause.
at org.postgresql.jdbc.BatchResultHandler.handleError(BatchResultHandler.java:136)
at org.postgresql.core.v3.QueryExecutorImpl$1.handleError(QueryExecutorImpl.java:419)
at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:308)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2004)
at org.postgresql.core.v3.QueryExecutorImpl.flushIfDeadlockRisk(QueryExecutorImpl.java:1187)
at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1212)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:351)
at org.postgresql.jdbc.PgStatement.executeBatch(PgStatement.java:1019)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$.savePartition(JdbcUtils.scala:215)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$saveTable$1.apply(JdbcUtils.scala:277)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$saveTable$1.apply(JdbcUtils.scala:276)
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1$$anonfun$apply$33.apply(RDD.scala:920)
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1$$anonfun$apply$33.apply(RDD.scala:920)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

[WARN] [TaskSetManager] Lost task 2.0 in stage 6.0 (TID 23, localhost): TaskKilled (killed intentionally)
Exception in thread "main" org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 6.0 failed 1 times, most recent failure: Lost task 0.0 in stage 6.0 (TID 21, localhost): java.sql.BatchUpdateException: Batch entry 0 INSERT INTO pio_event_1 (id,event,entityType,entityId,targetEntityType,targetEntityId,properties,eventTime,eventTimeZone,tags,prId,creationTime,creationTimeZone) VALUES ('7067bbb81ba84086aeb2d70a8c572f04','view','user','53f208fd302a12e8e5000017','item','gonsie',NULL,'2015-3-6 13:52:33.032000 +0:0:0','UTC',NULL,NULL,'2015-3-6 13:52:33.032000 +0:0:0','UTC') was aborted.  Call getNextException to see the cause.
at org.postgresql.jdbc.BatchResultHandler.handleError(BatchResultHandler.java:136)
at org.postgresql.core.v3.QueryExecutorImpl$1.handleError(QueryExecutorImpl.java:419)
at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:308)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2004)
at org.postgresql.core.v3.QueryExecutorImpl.flushIfDeadlockRisk(QueryExecutorImpl.java:1187)
at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1212)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:351)
at org.postgresql.jdbc.PgStatement.executeBatch(PgStatement.java:1019)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$.savePartition(JdbcUtils.scala:215)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$saveTable$1.apply(JdbcUtils.scala:277)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$saveTable$1.apply(JdbcUtils.scala:276)
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1$$anonfun$apply$33.apply(RDD.scala:920)

{
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1$$anonfun$apply$33.apply(RDD.scala:920)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1431)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1419)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1418)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1418)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:799)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:799)
at scala.Option.foreach(Option.scala:236)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:799)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1640)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1599)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1588)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:620)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1832)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1845)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1858)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1929)
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1.apply(RDD.scala:920)
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1.apply(RDD.scala:918)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:150)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:111)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:316)
at org.apache.spark.rdd.RDD.foreachPartition(RDD.scala:918)
at org.apache.spark.sql.DataFrame$$anonfun$foreachPartition$1.apply$mcV$sp(DataFrame.scala:1444)
at org.apache.spark.sql.DataFrame$$anonfun$foreachPartition$1.apply(DataFrame.scala:1444)
at org.apache.spark.sql.DataFrame$$anonfun$foreachPartition$1.apply(DataFrame.scala:1444)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:56)
at org.apache.spark.sql.DataFrame.withNewExecutionId(DataFrame.scala:2086)
at org.apache.spark.sql.DataFrame.foreachPartition(DataFrame.scala:1443)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$.saveTable(JdbcUtils.scala:276)
at org.apache.spark.sql.DataFrameWriter.jdbc(DataFrameWriter.scala:311)
at io.prediction.data.storage.jdbc.JDBCPEvents.write(JDBCPEvents.scala:158)
at io.prediction.data.storage.PEvents$class.write(PEvents.scala:170)
at io.prediction.data.storage.jdbc.JDBCPEvents.write(JDBCPEvents.scala:29)
at io.prediction.core.SelfCleaningDataSource$class.wipePEvents(SelfCleaningDataSource.scala:168)
at org.template.DataSource.wipePEvents(DataSource.scala:48)
at io.prediction.core.SelfCleaningDataSource$class.cleanPersistedPEvents(SelfCleaningDataSource.scala:152)
at org.template.DataSource.cleanPersistedPEvents(DataSource.scala:48)
at org.template.DataSource.readTraining(DataSource.scala:62)
at org.template.DataSource.readTraining(DataSource.scala:48)
at io.prediction.controller.PDataSource.readTrainingBase(PDataSource.scala:37)
at io.prediction.controller.Engine$.train(Engine.scala:641)
at io.prediction.controller.Engine.train(Engine.scala:174)
at io.prediction.workflow.CoreWorkflow$.runTrain(CoreWorkflow.scala:65)
at io.prediction.workflow.CreateWorkflow$.main(CreateWorkflow.scala:247)
at io.prediction.workflow.CreateWorkflow.main(CreateWorkflow.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:731)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.sql.BatchUpdateException: Batch entry 0 INSERT INTO pio_event_1 (id,event,entityType,entityId,targetEntityType,targetEntityId,properties,eventTime,eventTimeZone,tags,prId,creationTime,creationTimeZone) VALUES ('7067bbb81ba84086aeb2d70a8c572f04','view','user','53f208fd302a12e8e5000017','item','gonsie',NULL,'2015-3-6 13:52:33.032000 +0:0:0','UTC',NULL,NULL,'2015-3-6 13:52:33.032000 +0:0:0','UTC') was aborted.  Call getNextException to see the cause.
at org.postgresql.jdbc.BatchResultHandler.handleError(BatchResultHandler.java:136)
at org.postgresql.core.v3.QueryExecutorImpl$1.handleError(QueryExecutorImpl.java:419)
at org.postgresql.core.v3.QueryExecutorImpl$ErrorTrackingResultHandler.handleError(QueryExecutorImpl.java:308)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2004)
at org.postgresql.core.v3.QueryExecutorImpl.flushIfDeadlockRisk(QueryExecutorImpl.java:1187)
at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:1212)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:351)
at org.postgresql.jdbc.PgStatement.executeBatch(PgStatement.java:1019)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$.savePartition(JdbcUtils.scala:215)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$saveTable$1.apply(JdbcUtils.scala:277)
at org.apache.spark.sql.execution.datasources.jdbc.JdbcUtils$$anonfun$saveTable$1.apply(JdbcUtils.scala:276)
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1$$anonfun$apply$33.apply(RDD.scala:920)
at org.apache.spark.rdd.RDD$$anonfun$foreachPartition$1$$anonfun$apply$33.apply(RDD.scala:920)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

Any ideas?

Pat Ferrel

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Jun 27, 2016, 10:06:34 PM6/27/16
to Aaron Mangum, actionml-user
I don’t see anything obvious. What is the result of 

`pio app list`

?


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Aaron Mangum

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Jun 28, 2016, 4:38:13 PM6/28/16
to actionml-user, p...@occamsmachete.com
[INFO] [App$]                 Name |   ID |                                                       Access Key | Allowed Event(s)
[INFO] [App$] candidate-recommender |    1 | fJxITe49TljbzbHycGOYQTQHC90PZMOQ73XZ397kOK9vobrzqlxY8oHI6E8gXGOc | (all)
[INFO] [App$] Finished listing 1 app(s).
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