fail in "make" abyss

[Febri Gunawan]

Dear all,

Hi, my name is Febri. I want ask about my problem about installing abyss.
../boost/tuple/detail/tuple_basic.hpp: In function ‘typename boost::tuples::access_traits<typename boost::tuples::element<N, boost::tuples::cons<HT, TT> >::type>::const_type boost::tuples::get(const boost::tuples::cons<HT, TT>&)’:
../boost/tuple/detail/tuple_basic.hpp:228:45: error: typedef ‘cons_element’ locally defined but not used [-Werror=unused-local-typedefs]
   typedef BOOST_DEDUCED_TYPENAME impl::type cons_element;
                                             ^
cc1plus: all warnings being treated as errors
make[2]: *** [libassembly_a-AssemblyAlgorithms.o] Error 1
make[2]: Leaving directory `/home/febrig/Downloads/abyss-1.5.1/Assembly'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/febrig/Downloads/abyss-1.5.1'
make: *** [all] Error 2

I don't know why it can happen.. What's wrong, and how can I solve it? I've browsed and I got nothing..
FYI; I'm using Fedora 20, can abyss run in fedora?

Thanks.
Best regards,
Febri

[Tony Raymond]

Hi Febri,

Fedora should be fine. The problem is that the latest gcc complains about many lines in boost libraries when boost is not installed to a system folder. Unfortunately, this is how we recommend installing boost in the latest version of ABySS.

The workaround is to compile without treating warnings as errors:

./configure CXXFLAGS=-Wno-error ...

make

This will be fixed in ABySS 1.5.2.

Cheers,

Tony

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[Febri Gunawan]

Thank you very much. Now I install the 1.5.0 and it can run. By the way, I want to ask, are there any great tutorial to use abyss, because I want to find the synthax, like how to use abyss-map.