What environment variables I should specify to let ABySS know a third party library?

[Qiyuan Qiu]

Dear all, 

According to the help in ./configure of ABySS-1.5.1, one can specify environment variables.

For instance, the default CFLAGS used by ./configure is "-O2 -g". If one were to use gprof, he needs to use the following command to specify the CFLAGS. 

./configure CFLAGS="-pg -O2 -g"

Then compile the source code, we can get executable files that knows how to generate gprof output. 

My questions is, what environmental variables I should specify if I were to use a library called mpiP?

Should I set LIBS or LDFLAGS maybe?

Thank you for you time,

Qiyuan Qiu

[Tony Raymond]

Hi Qiyuan,

I haven't tried compiling ABySS with mpiP. You could try configuring with these (flags taken from here http://mpip.sourceforge.net/#Using):

./configure LDFLAGS=-L${mpiP_root}/lib LIBS="-lmpiP -lm -lbfd -liberty -lunwind"

Cheers,

Tony

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