I am a Biologist, I could successfully install the Pathvisio, I prepared the input tab delimited data file of zebra fish, data is RNA seq, I would want to see the fold change values in pathways, but I am not able to understand what is happening.
In input file, In first column I have Ensemble IDs of Zebra fish, I am selecting delimiter as tab, proceeding forward I am choosing manually Ensemble from the drop down, I get the message that all the IDs were successfully mapped, later one pgex.ex file is formed along with pgex file and xml file (0kb), in pgex.ex file I see all the IDs (do not know whether it is normal), however, at the end when I want to see color change for expression, I am getting grey blocks, no color change, but there is no error in mapping. I kindly request to help me.
I am attaching the input data file.
Thanking you
Best Regards
Ayesha