WarpTools support for EER files?

[Valerie Perez]

Hello Warp Team,

I was wondering how I can utilize WarpTools to process EER data files for a tomography dataset. 

I am trying to follow the tutorial on the github page for processing frame stacks, but I'm not sure where I would implement the EER flag/info that is suggested in the directions for Warp (not WarpTools) at http://www.warpem.com/warp/?page_id=1606

Can you please provide some guidance? I am very excited to use the Warp/M pipeline for this project!

Thank you,

Valerie

[Alister Burt]

Hi Valerie,

You need to add a few flags when creating your frame series settings file. 

Good luck!

Alister

 

Sent from mobile - apologies for brevity

On Aug 8, 2024, at 22:59, Valerie Perez <omegap...@gmail.com> wrote:

Hello Warp Team,

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[Alister Burt]

Absolutely

I put the list in CC so that others are aware of this too

Cheers,

Alister

Sent from mobile - apologies for brevity

On Aug 8, 2024, at 23:34, Valerie Perez <omegap...@gmail.com> wrote:

Thank you very much for the quick reply!

I have another quick question: if our EER files are saved as gain-corrected, can I simply not specify a gain ref path to continue with the processing?

I do have the gain reference, but I do not have the un-corrected files.

Please let me know.