Gene length used to calculate TPM in dataset TCGA TARGET GTEx
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Marcelo Falchetti
Jul 26, 2021, 11:36:46 AM7/26/21
to UCSC Xena and Cancer Genomics Browser
Hi, I would like to know if you have the gene lengths available for me to transform RSEM expected counts into TPM.
Thank you!
Mary Goldman
Jul 26, 2021, 5:53:32 PM7/26/21
to Marcelo Falchetti, UCSC Xena and Cancer Genomics Browser
Hi Marcelo,
You can read more about the pipeline they ran on the hub page (https://xenabrowser.net/datapages/?host=https%3A%2F%2Ftoil.xenahubs.net), and in the publication (https://www.nature.com/articles/nbt.3772).
Best,
Mary
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Mary Goldman, Design and Outreach Engineer
Revealing life's code
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