Dear Dr. Courtiol,
Thanks for it! Ya that makes sense. I noticed that the initial conditions are different for the simulations. I am just wondering why the initial conditions are different even though I set up the same random state seed.
I know there are not an absolute answer about the right or wrong on the simulation results (since it is stochastic), however, I still want to make sure that my results are reproducible and transparent to other people who may want to replicate my results in future.. As you can see, the only difference between my sim 1 and sim 2 is how I write my codes to execute the simulation, but at the end I still have different outcomes because of the initial conditions (I don't know how TVB decides initial condition for each simulation). Naturally I will doubt myself why it happened. My research is to do signal processing on the simulated signals, so I want to ensure the signals (data) I generated are good... So I guess my final question is that, is it possible that we can assign an initial condition to the system dynamics so that it will generate similar results every time, no matter how we generate the simulation?
Thanks again for your answer! And please forgive me if it is a super dumb question..
Best Regards,
Yile