How to update Trinity --> v2.11.0

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yaazkid

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Nov 21, 2020, 7:56:19 PM11/21/20

to trinityrnaseq-users

Hi,

I am working on a project and I require the use of Trinity. However, when I run my command using Trinity, it says that

** NOTE: Latest version of Trinity is v2.11.0, and can be obtained at: https://github.com/trinityrnaseq/trinityrnaseq/releases

followed by,

Trinity Trinity-v2.11.0 requires salmon to be installed. Get it here: https://combine-lab.github.io/salmon/ at /usr/local/bin/Trinity line 3973.

I went to the designated site to download trinity, but I am having trouble installing as there are four different assets and I am not sure which to download and how to download it onto command-line.

Any suggestions would be very much appreciated.

I am running all my commands on command-line and using a secure shell program.

Brian Haas

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Nov 22, 2020, 10:31:59 AM11/22/20

to yaazkid, trinityrnaseq-users

Hi,

Trinity uses Salmon v1.0.0

If you can use our Trinity singularity or docker image, they come with everything preinstalled and that's the best way to use Trinity.

best,

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