The one built into Jena has the advantage of being built into
Jena out of the box and I believe available through Fuseki. I
haven't tracked whether it is already used elsewhere and you may
want to follow up on the jena mailing list.
The TQ SHACL API has broader coverage of SHACL Advanced Features
and SHACL-JS and is the one that is integrated into TopBraid
products, i.e. it has a full editor and interactive constraint
checking tooling around it.
HTH
Holger
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