I'm not able to reproduce the issue you describe. Below is an MCVE, can you please modify it to show the failure you are getting? The .foo attribute on B is returned:
from sqlalchemy import Column
from sqlalchemy import create_engine
from sqlalchemy import Integer
from sqlalchemy import String
from sqlalchemy.ext.declarative import AbstractConcreteBase
from sqlalchemy.ext.declarative import declarative_base
from sqlalchemy.ext.declarative import declared_attr
from sqlalchemy.orm import configure_mappers
from sqlalchemy.orm import query_expression
from sqlalchemy.orm import Session
from sqlalchemy.orm import with_expression
Base = declarative_base()
__tablename__ = "b"
id = Column(Integer, primary_key=True)
data = Column(String(50))
__mapper_args__ = {"polymorphic_identity": "b"}
class C(A):
__tablename__ = "c"
id = Column(Integer, primary_key=True)
__mapper_args__ = {"polymorphic_identity": "c"}
configure_mappers()
e = create_engine("sqlite://", echo=True)
Base.metadata.create_all(e)
session = Session(e)
session.add(B(id=1, data='b data'))
session.commit()
b1 = session.query(A).options(with_expression(A.foo, B.data + ' hi')).all()[0]
assert b1.foo == "b data hi"