Display a Template

Franz Kugel

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Apr 20, 2020, 5:48:22 AM4/20/20

to SpyKING CIRCUS

Hey there,

After an errorless pass of spyking circus I wanted to get some more information. So I tried the example scripts (https://spyking-circus.readthedocs.io/en/latest/advanced/analysis.html). Unfortunately, the Display a template script is not working for me. The Compute ISI script is working.

When calling the 'params.get_data_file()' function, I get following error:

----------------------------  Error  -----------------------------
| The extension .params is not valid for a hdf5 file

I started with:

params = CircusParser('2020-03-31T20-54-27P6DIV29-IG-1h.params'), this line workes fine. I did not change anything in the directory nor in the files.

When I try to manually set the values for N_e = 60 and N_t = 3 (as given by the params file), I get this error:

ValueError: cannot reshape array of size 9060 into shape (60,3)

Greets,

Friedrich

Ps: is it normal, that the tmp folder is empty? and if yes, is it possible to directly save the templates?

Pierre Yger

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Apr 20, 2020, 6:41:20 AM4/20/20

to Franz Kugel, SpyKING CIRCUS

You should apply CircusParser not to the .params, but to the data file itself

Best

Pierre

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Franz Kugel

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Apr 20, 2020, 6:43:05 AM4/20/20

to SpyKING CIRCUS

Sorry for my confusion!
But which data file? the result file?

Am Montag, 20. April 2020 12:41:20 UTC+2 schrieb Pierre Yger:

You should apply CircusParser not to the .params, but to the data file itself

Best

Pierre

Le lun. 20 avr. 2020 à 11:48, Franz Kugel <sch...@berlin.dno-ev.de> a écrit :

Hey there,

After an errorless pass of spyking circus I wanted to get some more information. So I tried the example scripts (https://spyking-circus.readthedocs.io/en/latest/advanced/analysis.html). Unfortunately, the Display a template script is not working for me. The Compute ISI script is working.

When calling the 'params.get_data_file()' function, I get following error:
----------------------------  Error  -----------------------------
| The extension .params is not valid for a hdf5 file
I started with:
params = CircusParser('2020-03-31T20-54-27P6DIV29-IG-1h.params'), this line workes fine. I did not change anything in the directory nor in the files.

When I try to manually set the values for N_e = 60 and N_t = 3 (as given by the params file), I get this error:
ValueError: cannot reshape array of size 9060 into shape (60,3)
Greets,
Friedrich

Ps: is it normal, that the tmp folder is empty? and if yes, is it possible to directly save the templates?
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Franz Kugel

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Apr 20, 2020, 7:08:35 AM4/20/20

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I tried the data files: I always get this error:

----------------------------  Error  -----------------------------
| Not all nodes can read/write the data file. Check path?
------------------------------------------------------------------

But I the path are correct (I tried absolute and relative paths)
I also checked the permissions: all are read/write

Geng Jinghui

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Feb 2, 2021, 2:39:05 AM2/2/21

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Hi Friedrich, have you solved this error?

Pierre Yger

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Feb 2, 2021, 4:52:18 AM2/2/21

to Geng Jinghui, SpyKING CIRCUS

Very strange. Do you launch the software via command line or via the graphical GUI (spyking-circus-launcher) ? Latest version ? (1.0.6) Windows ? Maybe double check the probe file, and send it to me, to be sure there is no python syntax error in it?

Best

Pierre

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sch...@berlin.dno-ev.de

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Feb 2, 2021, 6:05:18 AM2/2/21

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Hi,

After a complete de-installation and re-installation including a new environment, the error disappered, but I do not know what exactly it was :/

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