Pathnames truncated...

[Tom Diaz]

With Sphinx 3.5.4, I am seeing pathnames apparently parsed incorrectly.

Example:

Index file contains

  

.. toctree::
   :maxdepth: 2

   binding_free_energies/binding_free_energies
   general_md/general_md
   protein-ligand_md/protein-ligand_md

When this is processed, the first entry (bind_free_energies) works fine.

The other two generate a sphinx warning about "nonexisting files" that shows a truncated version of the pathname, such as 

"general_md/general_"

(missing the MD).

If anyone has seen this before I'd appreciate some insight.

[Tom Diaz]

Happy ending to this one.  The source_suffix value in conf.py was accidentally set to "md" (minus the period).  So Sphinx was lopping off the MD on the end of pathnames and trying to open them!