1) Data written by an application to the local filesystem of an instance will be lost when you re-deploy the app. Additionally, the distributed nature of the ShinyApps.io platform means that instances may be shut down and re-created at any time for maintenance or to recover from server failures.
2) It is possible to have more than one instance of an application. This situation means that multiple instances of an application do not share a local filesystem. A file written to one instance will not be available to another instance.
We are considering whether we need to provide a shared data store of some kind, but we haven't gotten enough data to help us determine whether those added features would be ones that would be useful premium features.
-Tareef
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