Hi Robert,
Thank you for working to support the multi package! Thank you for the question. I include this reply to the multi list. I think we could also continue to discuss here as multi is part of sbml.
Specific to your question, you could first define mult:speciesTypes in the following way:
<multi:listOfSpeciesTypes>
<multi:speciesType multi:id="st_SMAD1" multi:name=" SMAD1" …/>
<multi:speciesType multi:id="st_SMAD5" multi:name=" SMAD5" …/>
<multi:speciesType multi:id="st_SMAD8" multi:name=" SMAD8" …/>
<multi:speciesType multi:id="st_SMAD1_5_8" multi:name=" SMAD1_5_8" …>
<multi:listOfSpecieTypeInstances>
<multi:speciesTypeInstance multi:id=”sti_SMAD1” multi:speciesType=”st_SMAD1” … />
<multi:speciesTypeInstance multi:id=”sti_SMAD5” multi:speciesType=”st_SMAD5” … />
<multi:speciesTypeInstance multi:id=”sti_SMAD8” multi:speciesType=”st_SMAD8” … />
</ multi:listOfSpecieTypeInstances >
</multi:speciesType >
…
</multi:listOfSpeciesTypes >
And in speces to reference the speciesTypes, you may have:
<listOfSpeces>
<species id=”species_SMAD1_5_8” multi:speciesType=”st_SMAD1_5_8”… />
<species id=”species_SMAD1” multi:speciesType=”st_SMAD1”… />
<species id=”species_SMAD5” multi:speciesType=”st_SMAD5”… />
<species id=”species_SMAD8” multi:speciesType=”st_SMAD8”… />
…
</listOfSpeces>
Depending the purpose, annotation can be added to species, speciesType, and/or speciesTypeInstance. I consider species should be a good place to be annotated with a uniprot id.
I would be happy to answer any further questions and clarify my reply if needed.
Best,
Fengkai
====================
Fengkai Zhang, MD, MMath
Staff Scientist
Laboratory of Immune System Biology, DIR, NIAID
9000 Rockville Pike
Building 4, Room 137
MSC 0421
Bethesda MD 20892
Phone: 301.761.5442
Fax: 301.480.1660
NIAID, National Institutes of Health, DHHS
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