Giac failed, help :(((

[Thuong To]

I tried to use cmd "make" but giac failed. Help me :(((

[Dima Pasechnik]

From your log it's clear that libnauty (typically from a package
called nauty, or libnauty, or libnauty-dev - depending on the
particular Linux distribution you're using) installed system-wide on
your machine is broken:
--------------------------------------------------
...
[spkg-install] /usr/bin/bash ../libtool --tag=CXX --mode=link g++
-std=gnu++11 -g -O2 -g -O2 -std=gnu++11 -fno-strict-aliasing
-DGIAC_GENERIC_CONSTANTS -DTIMEOUT -no-undefined
-Wl,-rpath-link,/home/garbaca/sage-10.4/local/lib
-L/home/garbaca/sage-10.4/local/lib
-Wl,-rpath,/home/garbaca/sage-10.4/local/lib
-Wl,-rpath-link,/home/garbaca/sage-10.4/local/lib
-L/home/garbaca/sage-10.4/local/lib
-Wl,-rpath,/home/garbaca/sage-10.4/local/lib -o icas icas.o
libxcas.la -lreadline -lncurses -lcurl -lglpk -ldl -lm -lecm -lmpfi
-lmpfr -lgmp -L/home/garbaca/Downloads/sage-10.4/local/lib -lgsl
-lopenblas -lm -L/usr/lib/x86_64-linux-gnu/openblas-pthread/
-lopenblas -lrt -lpthread -lnauty -lcliquer -lcurl -lglpk -ldl -lm
-lecm -lmpfi -lmpfr -lgmp
[spkg-install] libtool: link: g++ -std=gnu++11 -g -O2 -g -O2
-std=gnu++11 -fno-strict-aliasing -DGIAC_GENERIC_CONSTANTS -DTIMEOUT
-Wl,-rpath-link -Wl,/home/garbaca/sage-10.4/local/lib -Wl,-rpath
-Wl,/home/garbaca/sage-10.4/local/lib -Wl,-rpath-link
-Wl,/home/garbaca/sage-10.4/local/lib -Wl,-rpath
-Wl,/home/garbaca/sage-10.4/local/lib -o .libs/icas icas.o
-L/home/garbaca/sage-10.4/local/lib ./.libs/libxcas.a
/home/garbaca/sage-10.4/local/var/tmp/sage/build/giac-1.9.0.15p0/src/src/.libs/libgiac.so
-L/home/garbaca/Downloads/sage-10.4/local/lib
-L/usr/lib/x86_64-linux-gnu/openblas-pthread/ -lntl -lpari -lreadline
-lncurses -lgsl -lopenblas -lrt -lpthread -lnauty -lcliquer -lcurl
-lglpk -ldl -lm -lecm -lmpfi -lmpfr -lgmp -Wl,-rpath
-Wl,/home/garbaca/sage-10.4/local/lib
[spkg-install] /usr/bin/ld: icas.o: in function
`texmacs_graph_output(giac::gen const&, giac::gen&,
std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >&, int, giac::context const*)':
[spkg-install] /home/garbaca/sage-10.4/local/var/tmp/sage/build/giac-1.9.0.15p0/src/src/icas.cc:500:(.text+0x306e):
warning: the use of `tmpnam' is dangerous, better use `mkstemp'
[spkg-install] /usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/libnauty.so:
undefined reference to `graph_free@CLIQUER_1'
[spkg-install] /usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/libnauty.so:
undefined reference to `clique_unweighted_find_single@CLIQUER_1'
[spkg-install] /usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/libnauty.so:
undefined reference to `graph_new@CLIQUER_1'
[spkg-install] collect2: error: ld returned 1 exit status
[spkg-install] make[7]: *** [Makefile:792: icas] Error 1
[spkg-install] make[6]: *** [Makefile:507: all-recursive] Error 1
[spkg-install] make[5]: *** [Makefile:437: all] Error 2
[spkg-install] **********************************************************************************************************************************************************************************************************************************************
[spkg-install] Error building giac-1.9.0.15p0
----------------------------------------------------------------------------------

You can check linkage of your libnauty as follows:

ldd /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/libnauty.so

It should output something like

linux-vdso.so.1 (0x00007ffe31fc8000)
libcliquer.so.1 => /usr/lib64/libcliquer.so.1 (0x00007f1183ecb000)
libc.so.6 => /lib64/libc.so.6 (0x00007f1183cd1000)
/lib64/ld-linux-x86-64.so.2 (0x00007f1183f89000)

I suppose in your case you'd see something like

libcliquer.so.1 => ???

So you can either try to fix your system package, by reinstalling
(lib)nauty(-dev(el)),
checking that it's OK with ldd as above, then run make,
or tell sage not to use system-wide nauty, by

./configure --with-system-libnauty=no --with-system-nauty=no
make

HTH,
Dima

On Sat, Nov 30, 2024 at 7:26 AM Thuong To <thanhth...@gmail.com> wrote:
>
> I tried to use cmd "make" but giac failed. Help me :(((
>

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[Thuong To]

In fact it showed sth like this:

ldd /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/libnauty.so
linux-vdso.so.1 (0x00007f4e134d7000)
libcliquer.so.1 => /lib/libcliquer.so.1 (0x00007f4e1341f000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f4e13229000)
/lib64/ld-linux-x86-64.so.2 (0x00007f4e134d9000)

I tried like you said but still not working T_T

Vào lúc 00:59:59 UTC+7 ngày Chủ Nhật, 1 tháng 12, 2024, dim...@gmail.com đã viết:

[Dima Pasechnik]

On Sun, Dec 1, 2024 at 10:12 AM Thuong To <thanhth...@gmail.com> wrote:
>
> In fact it showed sth like this:
> ldd /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/libnauty.so
> linux-vdso.so.1 (0x00007f4e134d7000)
> libcliquer.so.1 => /lib/libcliquer.so.1 (0x00007f4e1341f000)
> libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f4e13229000)
> /lib64/ld-linux-x86-64.so.2 (0x00007f4e134d9000)
> I tried like you said but still not working T_T

OK, sorry for a wrong diagnosis. It's probably just a bug in giac's
build system.
Can you remove system-wide nauty and cliquer and try again?

> To view this discussion visit https://groups.google.com/d/msgid/sage-support/e5d45331-94ef-4ac2-9b6e-c879ce732e83n%40googlegroups.com.

[Thuong To]

Yeah I tried like you said and it worked!!! Tks a lot <3

Vào lúc 00:23:20 UTC+7 ngày Thứ Hai, 2 tháng 12, 2024, dim...@gmail.com đã viết: