Sage Crash Report

Robert Parini

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Aug 21, 2022, 7:24:53 PM8/21/22

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Using conda on macOS 12.4 (with Apple silicon) I get the attached error after installing sage with:

conda create -n sagetest sage
conda activate sagetest
sage

Sage_crash_report.txt

Isuru Fernando

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Aug 21, 2022, 10:44:27 PM8/21/22

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Can you share the output of the following command?

conda list -n sagetest

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Robert Parini

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Aug 22, 2022, 6:10:43 AM8/22/22

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Sure, output below, thanks

-------

# packages in environment at /Users/rparini/opt/miniconda3/envs/sagetest:
#
# Name Version Build Channel
_r-mutex 1.0.1 anacondar_1 conda-forge
alabaster 0.7.12 py_0 conda-forge
appnope 0.1.3 pyhd8ed1ab_0 conda-forge
arb 2.22.1 hb5d1efa_0 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py39hb18efdd_2 conda-forge
arpack 3.7.0 h58ebc17_2 conda-forge
attrs 22.1.0 pyh71513ae_1 conda-forge
babel 2.10.3 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.1 pyhd3eb1b0_0
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
bdw-gc 8.0.6 hc021e02_0 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
beniget 0.4.1 pyhd8ed1ab_0 conda-forge
blas-devel 3.9.0 16_osxarm64_openblas conda-forge
bleach 3.3.1 pyhd8ed1ab_0 conda-forge
brial 1.2.11 pyh694c41f_0 conda-forge
brotli 1.0.9 h1c322ee_7 conda-forge
brotli-bin 1.0.9 h1c322ee_7 conda-forge
brotlipy 0.7.0 py39hb18efdd_1004 conda-forge
bwidget 1.9.14 hce30654_1 conda-forge
bzip2 1.0.8 h3422bc3_4 conda-forge
c-ares 1.18.1 h3422bc3_0 conda-forge
ca-certificates 2022.07.19 hca03da5_0
cairo 1.16.0 had492bb_1012 conda-forge
cctools_osx-arm64 949.0.1 h332cad3_24
cddlib 1!0.94m h6d7a090_0 conda-forge
certifi 2022.6.15 py39h2804cbe_0 conda-forge
cffi 1.15.1 py39h04d3946_0 conda-forge
charset-normalizer 2.1.0 pyhd8ed1ab_0 conda-forge
clang 12.0.0 hca03da5_4
clang-12 12.0.0 default_he099f3d_4
clang_osx-arm64 12.0.0 hcb56dc5_3
clangxx 12.0.0 default_he099f3d_4
clangxx_osx-arm64 12.0.0 h39b79ac_3
cliquer 1.22 h27ca646_0 conda-forge
colorama 0.4.5 pyhd8ed1ab_0 conda-forge
compiler-rt 12.0.0 h4ccfd99_3
compiler-rt_osx-arm64 12.0.0 h4fb70ea_3
cryptography 37.0.4 py39h4cb6239_0 conda-forge
curl 7.84.0 h1a28f6b_0
cvxopt 1.3.0 py39h0786196_1 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cypari2 2.1.2 py39hfa3855d_5 conda-forge
cysignals 1.11.2 py39h17b953c_0 conda-forge
cython 0.29.32 py39h6e3512e_0 conda-forge
debugpy 1.6.3 py39h3c22d25_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
docutils 0.17.1 py39hca03da5_1
dsdp 5.8 h9397a75_1203 conda-forge
ecl 21.2.1 h8492d4d_2 conda-forge
eclib 20210625 h334b3ce_4 conda-forge
ecm 7.0.4 h47c7c1a_1002 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
expat 2.4.8 h6b3803e_0 conda-forge
fflas-ffpack 2.4.3 h11f2abc_2 conda-forge
fftw 3.3.10 nompi_h2e33b67_103 conda-forge
flintqs 1.0 ha2e105b_1001 conda-forge
flit-core 3.7.1 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.0 hfb34624_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.36.0 py39h4eb3d34_0 conda-forge
fplll 5.4.1 h5726e8d_0 conda-forge
fpylll 0.5.6 py39h6ecf5fc_1 conda-forge
freetype 2.12.1 hd633e50_0 conda-forge
fribidi 1.0.10 h27ca646_0 conda-forge
future 0.18.2 py39h2804cbe_5 conda-forge
gap-core 4.11.1 h733227d_3 conda-forge
gap-defaults 4.11.1 hce30654_3 conda-forge
gast 0.5.3 pyhd8ed1ab_0 conda-forge
gettext 0.21.0 h826f4ad_0
gf2x 1.3.0 hdaa854c_2 conda-forge
gfan 0.6.2 hec08f5c_1003 conda-forge
gfortran_impl_osx-arm64 11.3.0 h95416cd_25 conda-forge
gfortran_osx-arm64 11.3.0 h57527a5_0 conda-forge
giac 1.6.0.47 h70c726c_5 conda-forge
giflib 5.2.1 h27ca646_2 conda-forge
givaro 4.1.1 h76d1151_2 conda-forge
glpk 4.65 h6d7a090_1004 conda-forge
gmp 6.2.1 h9f76cd9_0 conda-forge
gmpy2 2.1.2 py39h6e385ed_0 conda-forge
graphite2 1.3.14 hc377ac9_1
gsl 2.7.1 h3af6ccd_1
harfbuzz 5.1.0 hd36a07e_0 conda-forge
icu 70.1 h6b3803e_0 conda-forge
idna 3.3 pyhd8ed1ab_0 conda-forge
igraph 0.9.9 h167d6bf_0 conda-forge
imagesize 1.4.1 pyhd8ed1ab_0 conda-forge
iml 1.0.5 hd52f0d1_1003 conda-forge
importlib-metadata 4.11.4 py39h2804cbe_0 conda-forge
importlib_resources 5.9.0 pyhd8ed1ab_0 conda-forge
ipykernel 6.15.1 pyh736e0ef_0 conda-forge
ipython 7.33.0 py39h2804cbe_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.7.2 pyhd8ed1ab_0 conda-forge
isl 0.22.1 hb904e53_2 conda-forge
jedi 0.18.1 pyhd8ed1ab_2 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
jmol 14.32.10 hce30654_0 conda-forge
jpeg 9e he4db4b2_2 conda-forge
jsonschema 4.9.1 pyhd8ed1ab_0 conda-forge
jupyter_client 7.2.2 py39hca03da5_0
jupyter_core 4.11.1 py39h2804cbe_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 1.1.1 pyhd8ed1ab_0 conda-forge
kiwisolver 1.4.4 py39hab5e169_0 conda-forge
krb5 1.19.3 hf9b2bbe_0 conda-forge
lcalc 2.0.5 he39a7b3_0 conda-forge
lcms2 2.12 had6a04f_0 conda-forge
ld64_osx-arm64 530 h001ce53_24
ldid 2.1.2 h34ab4f1_3 conda-forge
lerc 4.0.0 h9a09cb3_0 conda-forge
libblas 3.9.0 16_osxarm64_openblas conda-forge
libbraiding 1.1 h9f76cd9_0 conda-forge
libbrial 1.2.11 h84401d7_0 conda-forge
libbrotlicommon 1.0.9 h1c322ee_7 conda-forge
libbrotlidec 1.0.9 h1c322ee_7 conda-forge
libbrotlienc 1.0.9 h1c322ee_7 conda-forge
libcblas 3.9.0 16_osxarm64_openblas conda-forge
libclang-cpp12 12.0.0 default_he099f3d_4
libcurl 7.84.0 hc6d1d07_0
libcxx 14.0.6 h04bba0f_0 conda-forge
libdeflate 1.13 h57fd34a_0 conda-forge
libedit 3.1.20210910 h1a28f6b_0
libev 4.33 h642e427_1 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libflint 2.8.4 h0da3ec1_ntl_100 conda-forge
libgd 2.3.3 hede1055_3 conda-forge
libgfortran 5.0.0 11_3_0_hd922786_25 conda-forge
libgfortran-devel_osx-arm64 11.3.0 hfe9555d_25 conda-forge
libgfortran5 11.3.0 hdaf2cc0_25 conda-forge
libglib 2.72.1 ha1047ec_0 conda-forge
libhomfly 1.02r6 h27ca646_0 conda-forge
libiconv 1.16 h642e427_0 conda-forge
liblapack 3.9.0 16_osxarm64_openblas conda-forge
liblapacke 3.9.0 16_osxarm64_openblas conda-forge
libllvm12 12.0.0 h12f7ac0_4
libnghttp2 1.47.0 h232270b_1 conda-forge
libopenblas 0.3.21 openmp_hc731615_2 conda-forge
libpng 1.6.37 h9b2ccdc_4 conda-forge
libsodium 1.0.18 h27ca646_1 conda-forge
libsqlite 3.39.2 h2c9beb0_1 conda-forge
libssh2 1.10.0 hb80f160_3 conda-forge
libtiff 4.4.0 hd6ca8d7_3 conda-forge
libwebp 1.2.4 h328b37c_0 conda-forge
libwebp-base 1.2.4 h57fd34a_0 conda-forge
libxcb 1.13 h9b22ae9_1004 conda-forge
libxml2 2.9.14 h9d8dfc2_4 conda-forge
libxslt 1.1.35 ha8fb468_0 conda-forge
libzlib 1.2.12 ha287fd2_2 conda-forge
linbox 1.6.3 h6873b4c_6 conda-forge
llvm-openmp 14.0.4 hd125106_0 conda-forge
llvm-tools 12.0.0 h12f7ac0_4
lrcalc 2.1 h6b3803e_3 conda-forge
lxml 4.9.1 py39h9eb174b_0 conda-forge
m4ri 20140914 h17b34a0_1005 conda-forge
m4rie 20150908 h17b34a0_1001 conda-forge
make 4.3 he57ea6c_1 conda-forge
markupsafe 2.1.1 py39hb18efdd_1 conda-forge
matplotlib-base 3.5.3 py39h267d6a8_1 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
maxima 5.45.0 h6032a66_2 conda-forge
memory-allocator 0.1.2 py39hb18efdd_1 conda-forge
metis 5.1.0 h9f76cd9_1006 conda-forge
mistune 0.8.4 py39h5161555_1005 conda-forge
mpc 1.2.1 h309154c_0 conda-forge
mpfi 1.5.4 hbde5f5b_1001 conda-forge
mpfr 4.1.0 h6d7a090_1 conda-forge
mpmath 1.2.1 pyhd8ed1ab_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
nauty 2.7.2 h3422bc3_0 conda-forge
nbclient 0.5.13 pyhd8ed1ab_0 conda-forge
nbconvert 6.5.3 pyhd8ed1ab_0 conda-forge
nbconvert-core 6.5.3 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 6.5.3 pyhd8ed1ab_0 conda-forge
nbformat 5.4.0 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h07bb92c_1 conda-forge
nest-asyncio 1.5.5 pyhd8ed1ab_0 conda-forge
networkx 2.8.5 pyhd8ed1ab_0 conda-forge
notebook 6.4.12 pyha770c72_0 conda-forge
ntl 11.4.3 hbb3f309_1 conda-forge
numpy 1.23.2 py39h3668e8b_0 conda-forge
openblas 0.3.21 openmp_hf78f355_2 conda-forge
openjdk 17.0.3 h8128057_1 conda-forge
openjpeg 2.5.0 h5d4e404_1 conda-forge
openssl 1.1.1q ha287fd2_0 conda-forge
packaging 21.3 pyhd8ed1ab_0 conda-forge
palp 2.20 h27ca646_0 conda-forge
pandoc 2.12 hca03da5_0
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
pango 1.50.9 hc1f5a69_0 conda-forge
pari 2.13.3 h95ccf47_1_pthread conda-forge
pari-galdata 0.0.20180411 0 conda-forge
pari-seadata-small 0.0.20090618 0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
pcre 8.45 hbdafb3b_0 conda-forge
pcre2 10.37 hcf5f1cc_1 conda-forge
perl 5.34.0 h1230e6a_0
pexpect 4.8.0 pyh9f0ad1d_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.2.0 py39he45c975_2 conda-forge
pip 22.2.2 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h27ca646_0 conda-forge
pkg-config 0.29.2 hab62308_1008 conda-forge
pkgconfig 1.5.5 py39h2804cbe_2 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
planarity 3.0.0.5 h27ca646_1002 conda-forge
ply 3.11 py_1 conda-forge
ppl 1.2 h813adbb_1005 conda-forge
pplpy 0.8.6 py39h0e3572e_1 conda-forge
primecount 7.4 h2e04ded_1 conda-forge
primecountpy 0.1.0 py39h2bd9dac_2 conda-forge
primesieve 8.0 h9a09cb3_0 conda-forge
prometheus_client 0.14.1 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.30 pyha770c72_0 conda-forge
prompt_toolkit 3.0.30 hd8ed1ab_0 conda-forge
psutil 5.9.1 py39h9eb174b_0 conda-forge
pthread-stubs 0.4 h27ca646_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pygments 2.13.0 pyhd8ed1ab_0 conda-forge
pyopenssl 22.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyrsistent 0.18.1 py39hb18efdd_1 conda-forge
pysocks 1.7.1 py39h2804cbe_5 conda-forge
python 3.9.13 hc596b02_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.1 pyhd8ed1ab_0 conda-forge
python-lrcalc 2.1 py39h0ef5a74_3 conda-forge
python-tzdata 2022.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 2_cp39 conda-forge
pythran 0.11.0 py39h2550fe3_2 conda-forge
pytz 2022.2.1 pyhd8ed1ab_0 conda-forge
pytz-deprecation-shim 0.1.0.post0 py39h2804cbe_2 conda-forge
pyzmq 22.3.0 py39hc377ac9_2
qd 2.3.22 hbec66e7_1004 conda-forge
r-base 4.1.3 h29de36c_1 conda-forge
ratpoints 2.1.3 h47c7c1a_1002 conda-forge
readline 8.1.2 h46ed386_0 conda-forge
requests 2.28.1 pyhd8ed1ab_0 conda-forge
rpy2 3.5.1 py39r41h43ea957_0 conda-forge
rubiks 20070912 h9f76cd9_1001 conda-forge
rw 0.9 h3422bc3_0 conda-forge
sage 9.6 hd8ed1ab_0 conda-forge
sage-docbuild 9.6 pypi_0 pypi
sage-setup 9.6 pypi_0 pypi
sagelib 9.6 py39h1878682_2 conda-forge
sagemath-db-combinatorial-designs 20140630 1 conda-forge
sagemath-db-conway-polynomials 0.5.0 h4653dfc_1 conda-forge
sagemath-db-elliptic-curves 0.8.1 hecc5488_0 conda-forge
sagemath-db-graphs 20210214 hd8ed1ab_0 conda-forge
sagemath-db-polytopes 20170220 1 conda-forge
sagemath-standard 9.6 pypi_0 pypi
sagetex 3.6 pyhd8ed1ab_0 conda-forge
scipy 1.9.0 py39h14896cb_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 65.1.1 py39h2804cbe_0 conda-forge
simplegeneric 0.8.1 py_1 conda-forge
singular 4.2.1.p3 hdb28737_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
sphinx 4.5.0 pyh6c4a22f_0 conda-forge
sphinxcontrib-applehelp 1.0.2 py_0 conda-forge
sphinxcontrib-devhelp 1.0.2 py_0 conda-forge
sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.3 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_2 conda-forge
sqlite 3.39.2 h40dfcc0_1 conda-forge
suitesparse 5.10.1 h7cd81ec_1 conda-forge
symmetrica 2.0 h9f76cd9_1007 conda-forge
sympow 2.023.6 hbc999f1_2 conda-forge
sympy 1.10.1 py39h2804cbe_0 conda-forge
tachyon 0.99b6 hfb72b2a_1001 conda-forge
tapi 1100.0.11 he4954df_0 conda-forge
tbb 2021.5.0 h3e96240_1 conda-forge
terminado 0.15.0 py39h2804cbe_0 conda-forge
three.js 122 hd8ed1ab_2 conda-forge
threejs-sage 122 hd8ed1ab_2 conda-forge
tinycss2 1.1.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 he1e0b03_0 conda-forge
tktable 2.10 h4161312_3 conda-forge
tornado 6.2 py39h9eb174b_0 conda-forge
traitlets 5.3.0 pyhd8ed1ab_0 conda-forge
tzdata 2022c h191b570_0 conda-forge
tzlocal 4.2 py39h2804cbe_1 conda-forge
unicodedata2 14.0.0 py39hb18efdd_1 conda-forge
urllib3 1.26.11 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
widgetsnbextension 3.6.1 pyha770c72_0 conda-forge
xorg-libxau 1.0.9 h27ca646_0 conda-forge
xorg-libxdmcp 1.1.3 h27ca646_0 conda-forge
xsimd 8.0.5 hc021e02_0 conda-forge
xz 5.2.6 h57fd34a_0 conda-forge
zeromq 4.3.4 hbdafb3b_1 conda-forge
zipp 3.8.1 pyhd8ed1ab_0 conda-forge
zlib 1.2.12 ha287fd2_2 conda-forge
zn_poly 0.9.2 h391046e_0 conda-forge
zstd 1.5.2 h8128057_4 conda-forge

Isuru Fernando

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Aug 22, 2022, 10:12:15 AM8/22/22

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Can you try the following?

conda install mamba -n base
conda config --add channels conda-forge
conda config --set channel_priority strict
mamba create -n sagetest sage
conda activate sagetest
sage

On Sun, Aug 21, 2022 at 6:24 PM Robert Parini <robert...@gmail.com> wrote:

Robert Parini

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Aug 22, 2022, 12:09:56 PM8/22/22

to sage-support

Thanks, that works!

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