This is a permanent failure:sage -t --long --warn-long 67.0 --random-seed=127661401430613686989226810121136436198 src/sage/game_theory/parser.py
is this system-wide lrslib?
As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html3da1b22c25 (HEAD -> develop, tag: 9.5.rc1, trac/develop) Updated SageMath version to 9.5.rc1
FWIW, upgrading 9.5.rc0
to 9.5.rc1
and running ptestlong
gives exactly the same results as those reported for 9.5.rc0
.
HTH,
make[2]: *** [all-start] Error 2
real 3m36.733s
user 4m58.426s
sys 1m2.949s
***************************************************************
Error building Sage.
The following package(s) may have failed to build (not necessarily
during this run of 'make all-start'):
* package: zn_poly-0.9.2
last build time: Jan 16 00:17
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/zn_poly-0.9.2.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/zn_poly-0.9.2
* package: ratpoints-2.1.3.p5
last build time: Jan 16 00:17
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/ratpoints-2.1.3.p5.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/ratpoints-2.1.3.p5
* package: iml-1.0.4p1.p2
last build time: Jan 16 00:17
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2
* package: singular-4.2.1p3
last build time: Jan 16 00:18
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/singular-4.2.1p3.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/singular-4.2.1p3
[...]
make[1]: *** [all-start] Error 1
make: *** [all] Error 2
16/01/2022 1:25、G. M.-S. <list...@gmail.com>のメール:
Here it is.
config.log please
But I would urge that 9.5 still merge the positively reviews tickets marked "critical"/"blocker", such as https://trac.sagemath.org/ticket/29285(which fixes the build in the presence of pyenv).
Also note we have absolutely no automatic testing for the Apple Silicon (M1) platform. So it would be good if users/developers who have access to this platform test the release candidate.
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<config.log>
make[2]: *** [all-start] Error 2
real 4m27.295s
user 12m14.754s
sys 3m20.702s
***************************************************************
Error building Sage.
The following package(s) may have failed to build (not necessarily
during this run of 'make all-start'):
* package: iml-1.0.4p1.p2
last build time: Jan 16 00:17
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2
* package: singular-4.2.1p3
last build time: Jan 16 00:18
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/singular-4.2.1p3.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/singular-4.2.1p3
* package: tachyon-0.98.9.p7
last build time: Jan 16 11:08
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7
[...]
make[1]: *** [all-start] Error 1
make: *** [all] Error 2
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$ brew install apaffenholz/polymake/polymake
[...]
==> ./configure --prefix=/opt/homebrew/Cellar/polymake/4.5 --without-bliss --without-java --without-scip --without-soplex --without-singular --with-brew=bottle
Last 15 lines from /Users/gms/Library/Logs/Homebrew/polymake/219.configure:
2022-01-16 10:22:51 +0000
./configure
--prefix=/opt/homebrew/Cellar/polymake/4.5
--without-bliss
--without-java
--without-scip
--without-soplex
--without-singular
--with-brew=bottle
checking C++ compiler ... ok (clang++ is Apple CLANG (roughly 10.0) from Xcode 13.0.0)
checking C++ library ... ok (libc++ 12000, C++ 201402)
checking for package manager ... Homebrew installation seems corrupt: no shared libraries found in /usr/local/lib
If reporting this issue please do so at (not Homebrew/brew or Homebrew/core):
https://github.com/apaffenholz/homebrew-polymake/issues
These open issues may also help:
Brewing polymake on Apple Silicon / M1 / arm https://github.com/apaffenholz/homebrew-polymake/issues/2
$ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*
-rw-r--r-- 1 gms staff 13933 Jan 16 11:08 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h
-rw-r--r-- 1 gms staff 14714 Jan 16 11:08 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h
-rw-r--r-- 1 gms staff 4726 Jan 16 11:08 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h
-rw-r--r-- 1 gms staff 4947 Jan 16 11:08 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h
-rw-r--r-- 1 gms staff 10953 Jan 16 11:08 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h
-rw-r--r-- 1 gms staff 11307 Jan 16 11:08 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h
-rw-r--r-- 1 gms staff 1373 Jan 16 11:08 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h
-rw-r--r-- 1 gms staff 609 Jan 16 11:08 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h
$
$ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*
-rw-r--r-- 1 gms staff 13933 Jan 16 18:21 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h
-rw-r--r-- 1 gms staff 14714 Jan 16 18:21 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h
-rw-r--r-- 1 gms staff 4726 Jan 16 18:21 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h
-rw-r--r-- 1 gms staff 4947 Jan 16 18:21 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h
-rw-r--r-- 1 gms staff 10953 Jan 16 18:21 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h
-rw-r--r-- 1 gms staff 11307 Jan 16 18:21 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h
-rw-r--r-- 1 gms staff 1373 Jan 16 18:21 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h
-rw-r--r-- 1 gms staff 609 Jan 16 18:21 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h
$
The following package(s) may have failed to build (not necessarily
during this run of 'make tachyon'):
* package: primecountpy-0.1.0
last build time: Jan 16 21:55
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/primecountpy-0.1.0.log
* package: libhomfly-1.02r6
last build time: Jan 16 21:55
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/libhomfly-1.02r6.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/libhomfly-1.02r6
* package: m4ri-20200115
last build time: Jan 16 21:55
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/m4ri-20200115.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/m4ri-20200115
* package: openblas-0.3.18
last build time: Jan 16 21:58
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
* package: tachyon-0.98.9.p7
last build time: Jan 16 21:59
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7
$ brew uninstall openblas
Error: Refusing to uninstall /opt/homebrew/Cellar/openblas/0.3.19
because it is required by arpack, cbc, cgl, clp, coinutils, igraph, osi, r and suite-sparse, which are currently installed.
You can override this and force removal with:
brew uninstall --ignore-dependencies openblas
$ brew uninstall --ignore-dependencies openblas
Uninstalling /opt/homebrew/Cellar/openblas/0.3.19... (23 files, 51.9MB)
$ brew install openblas
==> Auto-updated Homebrew!
Updated 1 tap (homebrew/core).
==> Updated Formulae
Updated 10 formulae.
Running `brew update --preinstall`...
==> Downloading https://ghcr.io/v2/homebrew/core/openblas/manifests/0.3.19
Already downloaded: /Users/gms/Library/Caches/Homebrew/downloads/b47e3d834a9c52d0772b21372a675e3496a8480baa2f3e9b72d60def08682c3f--openblas-0.3.19.bottle_manifest.json
==> Downloading https://ghcr.io/v2/homebrew/core/openblas/blobs/sha256:33e6385102e69ddd716d8eb818861e2e2e2c08de20e06d189ffd69115131ed03
Already downloaded: /Users/gms/Library/Caches/Homebrew/downloads/82003eb6c8dd0091f8465e8203b39d67e81d7db4c9e4d790e71f6b2e8445ab3f--openblas--0.3.19.arm64_big_sur.bottle.tar.gz
==> Pouring openblas--0.3.19.arm64_big_sur.bottle.tar.gz
==> Caveats
openblas is keg-only, which means it was not symlinked into /opt/homebrew,
because macOS provides BLAS in Accelerate.framework.
For compilers to find openblas you may need to set:
export LDFLAGS="-L/opt/homebrew/opt/openblas/lib"
export CPPFLAGS="-I/opt/homebrew/opt/openblas/include"
For pkg-config to find openblas you may need to set:
export PKG_CONFIG_PATH="/opt/homebrew/opt/openblas/lib/pkgconfig"
==> Summary
🍺 /opt/homebrew/Cellar/openblas/0.3.19: 23 files, 51.9MB
==> Running `brew cleanup openblas`...
Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP.
Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
$
* package: openblas-0.3.18
last build time: Jan 17 02:24
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
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* package: iml-1.0.4p1.p2
last build time: Jan 17 03:43
log file: /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log
build directory: /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2
$ otool -lL /opt/homebrew/opt/openblas/lib/libopenblas.0.dylib
/opt/homebrew/opt/openblas/lib/libopenblas.0.dylib:
Load command 0
cmd LC_SEGMENT_64
cmdsize 712
segname __TEXT
vmaddr 0x0000000000000000
vmsize 0x0000000001274000
fileoff 0
filesize 19349504
maxprot 0x00000005
initprot 0x00000005
nsects 8
flags 0x0
Section
sectname __text
segname __TEXT
addr 0x0000000000004860
size 0x00000000010b4ddc
offset 18528
align 2^5 (32)
reloff 0
nreloc 0
flags 0x80000400
reserved1 0
reserved2 0
Section
sectname __text_startup
segname __TEXT
addr 0x00000000010b963c
size 0x0000000000000068
offset 17536572
align 2^2 (4)
reloff 0
nreloc 0
flags 0x80000400
reserved1 0
reserved2 0
Section
sectname __text_exit
segname __TEXT
addr 0x00000000010b96a4
size 0x0000000000000034
offset 17536676
align 2^2 (4)
reloff 0
nreloc 0
flags 0x80000400
reserved1 0
reserved2 0
Section
sectname __stubs
segname __TEXT
addr 0x00000000010b96d8
size 0x0000000000000354
offset 17536728
align 2^2 (4)
reloff 0
nreloc 0
flags 0x80000408
reserved1 0 (index into indirect symbol table)
reserved2 12 (size of stubs)
Section
sectname __stub_helper
segname __TEXT
addr 0x00000000010b9a2c
size 0x000000000000036c
offset 17537580
align 2^2 (4)
reloff 0
nreloc 0
flags 0x80000400
reserved1 0
reserved2 0
Section
sectname __const
segname __TEXT
addr 0x00000000010b9d98
size 0x000000000001ee08
offset 17538456
align 2^3 (8)
reloff 0
nreloc 0
flags 0x00000000
reserved1 0
reserved2 0
Section
sectname __cstring
segname __TEXT
addr 0x00000000010d8ba0
size 0x000000000000ae16
offset 17664928
align 2^0 (1)
reloff 0
nreloc 0
flags 0x00000002
reserved1 0
reserved2 0
Section
sectname __eh_frame
segname __TEXT
addr 0x00000000010e39b8
size 0x0000000000190640
offset 17709496
align 2^3 (8)
reloff 0
nreloc 0
flags 0x00000000
reserved1 0
reserved2 0
Load command 1
cmd LC_SEGMENT_64
cmdsize 712
segname __DATA
vmaddr 0x0000000001274000
vmsize 0x0000000000018000
fileoff 19349504
filesize 81920
maxprot 0x00000003
initprot 0x00000003
nsects 8
flags 0x0
Section
sectname __got
segname __DATA
addr 0x0000000001274000
size 0x0000000000000010
offset 19349504
align 2^3 (8)
reloff 0
nreloc 0
flags 0x00000006
reserved1 71 (index into indirect symbol table)
reserved2 0
Section
sectname __la_symbol_ptr
segname __DATA
addr 0x0000000001274010
size 0x0000000000000238
offset 19349520
align 2^3 (8)
reloff 0
nreloc 0
flags 0x00000007
reserved1 73 (index into indirect symbol table)
reserved2 0
Section
sectname __mod_init_func
segname __DATA
addr 0x0000000001274248
size 0x0000000000000008
offset 19350088
align 2^3 (8)
reloff 0
nreloc 0
flags 0x00000009
reserved1 0
reserved2 0
Section
sectname __mod_term_func
segname __DATA
addr 0x0000000001274250
size 0x0000000000000008
offset 19350096
align 2^3 (8)
reloff 0
nreloc 0
flags 0x0000000a
reserved1 0
reserved2 0
Section
sectname __const
segname __DATA
addr 0x0000000001274258
size 0x0000000000004ee8
offset 19350104
align 2^3 (8)
reloff 0
nreloc 0
flags 0x00000000
reserved1 0
reserved2 0
Section
sectname __data
segname __DATA
addr 0x0000000001279140
size 0x000000000000deec
offset 19370304
align 2^3 (8)
reloff 0
nreloc 0
flags 0x00000000
reserved1 0
reserved2 0
Section
sectname __bss
segname __DATA
addr 0x0000000001287030
size 0x0000000000002a50
offset 0
align 2^3 (8)
reloff 0
nreloc 0
flags 0x00000001
reserved1 0
reserved2 0
Section
sectname __common
segname __DATA
addr 0x0000000001289a80
size 0x000000000000001d
offset 0
align 2^3 (8)
reloff 0
nreloc 0
flags 0x00000001
reserved1 0
reserved2 0
Load command 2
cmd LC_SEGMENT_64
cmdsize 72
segname __LINKEDIT
vmaddr 0x000000000128c000
vmsize 0x0000000000190000
fileoff 19431424
filesize 1637888
maxprot 0x00000001
initprot 0x00000001
nsects 0
flags 0x0
Load command 3
cmd LC_ID_DYLIB
cmdsize 80
name /opt/homebrew/opt/openblas/lib/libopenblas.0.dylib (offset 24)
time stamp 1 Thu Jan 1 01:00:01 1970
current version 0.0.0
compatibility version 0.0.0
Load command 4
cmd LC_DYLD_INFO_ONLY
cmdsize 48
rebase_off 19431424
rebase_size 312
bind_off 19431736
bind_size 40
weak_bind_off 0
weak_bind_size 0
lazy_bind_off 19431776
lazy_bind_size 1240
export_off 19433016
export_size 78640
Load command 5
cmd LC_SYMTAB
cmdsize 24
symoff 19584856
nsyms 59149
stroff 20531816
strsize 255128
Load command 6
cmd LC_DYSYMTAB
cmdsize 80
ilocalsym 0
nlocalsym 54173
iextdefsym 54173
nextdefsym 4903
iundefsym 59076
nundefsym 73
tocoff 0
ntoc 0
modtaboff 0
nmodtab 0
extrefsymoff 0
nextrefsyms 0
indirectsymoff 20531240
nindirectsyms 144
extreloff 0
nextrel 0
locreloff 0
nlocrel 0
Load command 7
cmd LC_UUID
cmdsize 24
uuid 46618C7C-6835-37F7-9894-1F06985D4A9C
Load command 8
cmd LC_BUILD_VERSION
cmdsize 32
platform 1
minos 10.8
sdk 11.0
ntools 1
tool 3
version 711.0
Load command 9
cmd LC_SOURCE_VERSION
cmdsize 16
version 0.0
Load command 10
cmd LC_LOAD_DYLIB
cmdsize 80
name /opt/homebrew/opt/gcc/lib/gcc/11/libgfortran.5.dylib (offset 24)
time stamp 2 Thu Jan 1 01:00:02 1970
current version 6.0.0
compatibility version 6.0.0
Load command 11
cmd LC_LOAD_DYLIB
cmdsize 80
name /opt/homebrew/opt/gcc/lib/gcc/11/libgomp.1.dylib (offset 24)
time stamp 2 Thu Jan 1 01:00:02 1970
current version 2.0.0
compatibility version 2.0.0
Load command 12
cmd LC_LOAD_DYLIB
cmdsize 56
name /usr/lib/libSystem.B.dylib (offset 24)
time stamp 2 Thu Jan 1 01:00:02 1970
current version 1292.100.5
compatibility version 1.0.0
Load command 13
cmd LC_LOAD_DYLIB
cmdsize 80
name /opt/homebrew/opt/gcc/lib/gcc/11/libgcc_s.1.1.dylib (offset 24)
time stamp 2 Thu Jan 1 01:00:02 1970
current version 1.1.0
compatibility version 1.0.0
Load command 14
cmd LC_RPATH
cmdsize 32
path @loader_path (offset 12)
Load command 15
cmd LC_RPATH
cmdsize 96
path /opt/homebrew/Cellar/gcc/11.2.0_3/bin/../lib/gcc/11/gcc/aarch64-apple-darwin20/11 (offset 12)
Load command 16
cmd LC_RPATH
cmdsize 72
path /opt/homebrew/Cellar/gcc/11.2.0_3/bin/../lib/gcc/11/gcc (offset 12)
Load command 17
cmd LC_RPATH
cmdsize 104
path /opt/homebrew/Cellar/gcc/11.2.0_3/bin/../lib/gcc/11/gcc/aarch64-apple-darwin20/11/../../.. (offset 12)
Load command 18
cmd LC_RPATH
cmdsize 32
path @loader_path (offset 12)
Load command 19
cmd LC_FUNCTION_STARTS
cmdsize 16
dataoff 19511656
datasize 73200
Load command 20
cmd LC_DATA_IN_CODE
cmdsize 16
dataoff 19584856
datasize 0
Load command 21
cmd LC_CODE_SIGNATURE
cmdsize 16
dataoff 20786944
datasize 282368
/opt/homebrew/opt/openblas/lib/libopenblas.0.dylib (compatibility version 0.0.0, current version 0.0.0)
/opt/homebrew/opt/gcc/lib/gcc/11/libgfortran.5.dylib (compatibility version 6.0.0, current version 6.0.0)
/opt/homebrew/opt/gcc/lib/gcc/11/libgomp.1.dylib (compatibility version 2.0.0, current version 2.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)
/opt/homebrew/opt/gcc/lib/gcc/11/libgcc_s.1.1.dylib (compatibility version 1.0.0, current version 1.1.0)
$
Hi Matthias,I have posted binary releases for 9.5.rc1 on macOS with Intel or Arm CPUs at https://github.com/3-manifolds/Sage_macOS/releases/tag/v1.3-rc1. There are two separate disk images. You may recall that I do not use Homebrew or Conda, but I did have to use an experimental binary release of gfortran for M1 since I was not able to build the gfortran spkg.- Marc
On Saturday, January 15, 2022 at 3:01:14 PM UTC-6 matthia...@gmail.com wrote:
Based on the runs on GH Actions, I have updated the summary of platform support in https://wiki.sagemath.org/ReleaseTours/sage-9.5#SourcesTL;DR: It's all good now on all platforms tested on GH Actions, including Cygwin.But I would urge that 9.5 still merge the positively reviews tickets marked "critical"/"blocker", such as https://trac.sagemath.org/ticket/29285 (which fixes the build in the presence of pyenv).Also note we have absolutely no automatic testing for the Apple Silicon (M1) platform. So it would be good if users/developers who have access to this platform test the release candidate.
Hi Marc,Awesome! I've added it to https://wiki.sagemath.org/ReleaseTours/sage-9.5#BinariesMatthias
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That worked like a charm!* frame #0: 0xffff83c0f9024900
frame #1: 0x0000000153ff8b7c _dop.cpython-39-darwin.so`PyFortranObject_New + 40
frame #2: 0x0000000153ff66fc _dop.cpython-39-darwin.so`PyInit__dop + 1020
[...]
If anyone knows what dop stands for, I am all ears.