Sage 8.9.beta1 released

[Volker Braun]

As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 

This should fix downloading the configure tarball if you don't have autotools...

d1d7948d09 (tag: 8.9.beta1, trac/develop) Updated SageMath version to 8.9.beta1

906d1e540e (origin/develop) Trac #28099: bootstrap -d downloads wrong file

bcc2e0d43e (tag: 8.9.beta0) Updated SageMath version to 8.9.beta0

[Paul Masson]

Builds on macOS Mojave 10.14.5

[darwin doppelganger]

Builds on mac Mojave, 10.14.4:

SageMath version 8.9.beta1, Release Date: 2019-07-03
...
Sage build/upgrade complete!

[Emmanuel Charpentier]

Upgrading from a Python 3-based Sage 8.8, builds OK, but make ptest-python3 gives three failures:

----------------------------------------------------------------------

sage -t --long --warn-long 151.2 src/sage/coding/linear_code.py  # 4 doctests failed

sage -t --long --warn-long 151.2 src/sage/algebras/quantum_groups/quantum_group_gap.py  # 6 doctests failed

sage -t --long --warn-long 151.2 src/sage/interfaces/psage.py  # 1 doctest failed

----------------------------------------------------------------------

The last one is transient. as for the other two :

charpent@zen-book-flip:/usr/local/sage-P3$ sage -t --long --warn-long 151.2 src/sage/coding/linear_code.py 

Running doctests with ID 2019-07-04-20-17-47-c7243cba.

Git branch: develop

Using --optional=build,dochtml,dot2tex,fricas,gap_packages,giacpy_sage,memlimit,mpir,python2,sage

Doctesting 1 file.

sage -t --long --warn-long 151.2 src/sage/coding/linear_code.py

**********************************************************************

File "src/sage/coding/linear_code.py", line 3303, in sage.coding.linear_code.AbstractLinearCode.weight_distribution

Failed example:

    C.weight_distribution(algorithm="leon")   # optional - gap_packages (Guava package)

Exception raised:

    Traceback (most recent call last):

      File "sage/misc/cachefunc.pyx", line 1944, in sage.misc.cachefunc.CachedMethodCaller.__call__ (build/cythonized/sage/misc/cachefunc.c:10139)

        return cache[k]

    KeyError: (('leon',), ())

    During handling of the above exception, another exception occurred:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.coding.linear_code.AbstractLinearCode.weight_distribution[8]>", line 1, in <module>

        C.weight_distribution(algorithm="leon")   # optional - gap_packages (Guava package)

      File "sage/misc/cachefunc.pyx", line 1949, in sage.misc.cachefunc.CachedMethodCaller.__call__ (build/cythonized/sage/misc/cachefunc.c:10273)

        w = self._instance_call(*args, **kwds)

      File "sage/misc/cachefunc.pyx", line 1825, in sage.misc.cachefunc.CachedMethodCaller._instance_call (build/cythonized/sage/misc/cachefunc.c:9758)

        return self.f(self._instance, *args, **kwds)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/coding/linear_code.py", line 3358, in weight_distribution

        for L in StringIO(lines).readlines():

    TypeError: initial_value must be str or None, not bytes

**********************************************************************

File "src/sage/coding/linear_code.py", line 3311, in sage.coding.linear_code.AbstractLinearCode.weight_distribution

Failed example:

    C.weight_distribution() == C.weight_distribution(algorithm="leon")   # optional - gap_packages (Guava package)

Exception raised:

    Traceback (most recent call last):

      File "sage/misc/cachefunc.pyx", line 1944, in sage.misc.cachefunc.CachedMethodCaller.__call__ (build/cythonized/sage/misc/cachefunc.c:10139)

        return cache[k]

    KeyError: (('leon',), ())

    During handling of the above exception, another exception occurred:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.coding.linear_code.AbstractLinearCode.weight_distribution[12]>", line 1, in <module>

        C.weight_distribution() == C.weight_distribution(algorithm="leon")   # optional - gap_packages (Guava package)

      File "sage/misc/cachefunc.pyx", line 1949, in sage.misc.cachefunc.CachedMethodCaller.__call__ (build/cythonized/sage/misc/cachefunc.c:10273)

        w = self._instance_call(*args, **kwds)

      File "sage/misc/cachefunc.pyx", line 1825, in sage.misc.cachefunc.CachedMethodCaller._instance_call (build/cythonized/sage/misc/cachefunc.c:9758)

        return self.f(self._instance, *args, **kwds)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/coding/linear_code.py", line 3358, in weight_distribution

        for L in StringIO(lines).readlines():

    TypeError: initial_value must be str or None, not bytes

**********************************************************************

File "src/sage/coding/linear_code.py", line 3315, in sage.coding.linear_code.AbstractLinearCode.weight_distribution

Failed example:

    C.weight_distribution() == C.weight_distribution(algorithm="leon")   # optional - gap_packages (Guava package)

Exception raised:

    Traceback (most recent call last):

      File "sage/misc/cachefunc.pyx", line 1944, in sage.misc.cachefunc.CachedMethodCaller.__call__ (build/cythonized/sage/misc/cachefunc.c:10139)

        return cache[k]

    KeyError: (('leon',), ())

    During handling of the above exception, another exception occurred:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.coding.linear_code.AbstractLinearCode.weight_distribution[14]>", line 1, in <module>

        C.weight_distribution() == C.weight_distribution(algorithm="leon")   # optional - gap_packages (Guava package)

      File "sage/misc/cachefunc.pyx", line 1949, in sage.misc.cachefunc.CachedMethodCaller.__call__ (build/cythonized/sage/misc/cachefunc.c:10273)

        w = self._instance_call(*args, **kwds)

      File "sage/misc/cachefunc.pyx", line 1825, in sage.misc.cachefunc.CachedMethodCaller._instance_call (build/cythonized/sage/misc/cachefunc.c:9758)

        return self.f(self._instance, *args, **kwds)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/coding/linear_code.py", line 3358, in weight_distribution

        for L in StringIO(lines).readlines():

    TypeError: initial_value must be str or None, not bytes

**********************************************************************

File "src/sage/coding/linear_code.py", line 3319, in sage.coding.linear_code.AbstractLinearCode.weight_distribution

Failed example:

    C.weight_distribution() == C.weight_distribution(algorithm="leon")   # optional - gap_packages (Guava package)

Exception raised:

    Traceback (most recent call last):

      File "sage/misc/cachefunc.pyx", line 1944, in sage.misc.cachefunc.CachedMethodCaller.__call__ (build/cythonized/sage/misc/cachefunc.c:10139)

        return cache[k]

    KeyError: (('leon',), ())

    During handling of the above exception, another exception occurred:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.coding.linear_code.AbstractLinearCode.weight_distribution[16]>", line 1, in <module>

        C.weight_distribution() == C.weight_distribution(algorithm="leon")   # optional - gap_packages (Guava package)

      File "sage/misc/cachefunc.pyx", line 1949, in sage.misc.cachefunc.CachedMethodCaller.__call__ (build/cythonized/sage/misc/cachefunc.c:10273)

        w = self._instance_call(*args, **kwds)

      File "sage/misc/cachefunc.pyx", line 1825, in sage.misc.cachefunc.CachedMethodCaller._instance_call (build/cythonized/sage/misc/cachefunc.c:9758)

        return self.f(self._instance, *args, **kwds)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/coding/linear_code.py", line 3358, in weight_distribution

        for L in StringIO(lines).readlines():

    TypeError: initial_value must be str or None, not bytes

**********************************************************************

1 item had failures:

   4 of  18 in sage.coding.linear_code.AbstractLinearCode.weight_distribution

    [763 tests, 4 failures, 24.31 s]

----------------------------------------------------------------------

sage -t --long --warn-long 151.2 src/sage/coding/linear_code.py  # 4 doctests failed

----------------------------------------------------------------------

Total time for all tests: 24.5 seconds

    cpu time: 19.1 seconds

    cumulative wall time: 24.3 seconds

charpent@zen-book-flip:/usr/local/sage-P3$ sage -t --long --warn-long 151.2 src/sage/algebras/quantum_groups/quantum_group_gap.py

Running doctests with ID 2019-07-04-20-18-32-032984ad.

Git branch: develop

Using --optional=build,dochtml,dot2tex,fricas,gap_packages,giacpy_sage,memlimit,mpir,python2,sage

Doctesting 1 file.

sage -t --long --warn-long 151.2 src/sage/algebras/quantum_groups/quantum_group_gap.py

**********************************************************************

File "src/sage/algebras/quantum_groups/quantum_group_gap.py", line 1553, in sage.algebras.quantum_groups.quantum_group_gap.QuantumGroupModule._latex_

Failed example:

    latex(S)  # optional - gap_packages  # random (depends on dot2tex)

Exception raised:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.algebras.quantum_groups.quantum_group_gap.QuantumGroupModule._latex_[4]>", line 1, in <module>

        latex(S)  # optional - gap_packages  # random (depends on dot2tex)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/misc/latex.py", line 925, in __call__

        return LatexExpr(x._latex_())

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/algebras/quantum_groups/quantum_group_gap.py", line 1559, in _latex_

        return latex(self.crystal_graph())

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/algebras/quantum_groups/quantum_group_gap.py", line 2097, in crystal_graph

        vertices = [CrystalGraphVertex(self, d[repr(p)[1:-1]]) for p in G[bytes('points')]]

    TypeError: string argument without an encoding

**********************************************************************

File "src/sage/algebras/quantum_groups/quantum_group_gap.py", line 1658, in sage.algebras.quantum_groups.quantum_group_gap.QuantumGroupModule.crystal_graph

Failed example:

    G = V.crystal_graph(); G            # optional - gap_packages

Exception raised:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.algebras.quantum_groups.quantum_group_gap.QuantumGroupModule.crystal_graph[2]>", line 1, in <module>

        G = V.crystal_graph(); G            # optional - gap_packages

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/algebras/quantum_groups/quantum_group_gap.py", line 1666, in crystal_graph

        vertices = [CrystalGraphVertex(self, repr(p)) for p in G[bytes('points')]]

    TypeError: string argument without an encoding

**********************************************************************

File "src/sage/algebras/quantum_groups/quantum_group_gap.py", line 1662, in sage.algebras.quantum_groups.quantum_group_gap.QuantumGroupModule.crystal_graph

Failed example:

    G.is_isomorphic(B.digraph(), edge_labels=True)  # optional - gap_packages

Exception raised:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.algebras.quantum_groups.quantum_group_gap.QuantumGroupModule.crystal_graph[4]>", line 1, in <module>

        G.is_isomorphic(B.digraph(), edge_labels=True)  # optional - gap_packages

    NameError: name 'G' is not defined

**********************************************************************

File "src/sage/algebras/quantum_groups/quantum_group_gap.py", line 2082, in sage.algebras.quantum_groups.quantum_group_gap.HighestWeightSubmodule.crystal_graph

Failed example:

    G = S.crystal_graph()                    # optional - gap_packages

Exception raised:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.algebras.quantum_groups.quantum_group_gap.HighestWeightSubmodule.crystal_graph[4]>", line 1, in <module>

        G = S.crystal_graph()                    # optional - gap_packages

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/algebras/quantum_groups/quantum_group_gap.py", line 2097, in crystal_graph

        vertices = [CrystalGraphVertex(self, d[repr(p)[1:-1]]) for p in G[bytes('points')]]

    TypeError: string argument without an encoding

**********************************************************************

File "src/sage/algebras/quantum_groups/quantum_group_gap.py", line 2083, in sage.algebras.quantum_groups.quantum_group_gap.HighestWeightSubmodule.crystal_graph

Failed example:

    sorted(G.vertices(), key=str)            # optional - gap_packages

Exception raised:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.algebras.quantum_groups.quantum_group_gap.HighestWeightSubmodule.crystal_graph[5]>", line 1, in <module>

        sorted(G.vertices(), key=str)            # optional - gap_packages

    NameError: name 'G' is not defined

**********************************************************************

File "src/sage/algebras/quantum_groups/quantum_group_gap.py", line 2087, in sage.algebras.quantum_groups.quantum_group_gap.HighestWeightSubmodule.crystal_graph

Failed example:

    sorted(S.crystal_graph(False).vertices(), key=str)  # optional - gap_packages

Exception raised:

    Traceback (most recent call last):

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run

        self.compile_and_execute(example, compiler, test.globs)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute

        exec(compiled, globs)

      File "<doctest sage.algebras.quantum_groups.quantum_group_gap.HighestWeightSubmodule.crystal_graph[6]>", line 1, in <module>

        sorted(S.crystal_graph(False).vertices(), key=str)  # optional - gap_packages

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/algebras/quantum_groups/quantum_group_gap.py", line 2092, in crystal_graph

        return QuantumGroupModule.crystal_graph(self)

      File "/usr/local/sage-P3/local/lib/python3.7/site-packages/sage/algebras/quantum_groups/quantum_group_gap.py", line 1666, in crystal_graph

        vertices = [CrystalGraphVertex(self, repr(p)) for p in G[bytes('points')]]

    TypeError: string argument without an encoding

**********************************************************************

3 items had failures:

   3 of   8 in sage.algebras.quantum_groups.quantum_group_gap.HighestWeightSubmodule.crystal_graph

   1 of   6 in sage.algebras.quantum_groups.quantum_group_gap.QuantumGroupModule._latex_

   2 of   6 in sage.algebras.quantum_groups.quantum_group_gap.QuantumGroupModule.crystal_graph

    [529 tests, 6 failures, 9.65 s]

----------------------------------------------------------------------

sage -t --long --warn-long 151.2 src/sage/algebras/quantum_groups/quantum_group_gap.py  # 6 doctests failed

----------------------------------------------------------------------

Total time for all tests: 9.8 seconds

    cpu time: 9.4 seconds

    cumulative wall time: 9.6 seconds

HTH,

[Sébastien Labbé]

Testing with the following optional/external packages:

External software detected for doctesting: ffmpeg,graphviz,gurobi,imagemagick,internet,latex,pandoc

Using --optional=4ti2,awali,bliss,cbc,ccache,cmake,cryptominisat,dot2tex,e_antic,external,glucose,latte_int,lidia,lrslib,memlimit,mpir,ninja_build,normaliz,notedown,openssl,pandoc_attributes,pycosat,pynormaliz,python2,qhull,rst2ipynb,sage,topcom

I get

----------------------------------------------------------------------
sage -t --long src/sage/sat/boolean_polynomials.py  # 1 doctest failed
sage -t --long src/sage/databases/oeis.py  # 1 doctest failed
sage -t --long src/sage/databases/findstat.py  # 8 doctests failed
sage -t --long src/sage/combinat/designs/ext_rep.py  # 1 doctest failed
----------------------------------------------------------------------

Only the following ones are reproc**i**ble:

----------------------------------------------------------------------
sage -t --long src/sage/databases/oeis.py  # 1 doctest failed
sage -t --long src/sage/databases/findstat.py  # 8 doctests failed

----------------------------------------------------------------------

Follow up at https://trac.sagemath.org/ticket/25536

[Justin C. Walker]

> On Jul 3, 2019, at 05:29 , Volker Braun <vbrau...@gmail.com> wrote:
>
> As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

Built w/o problems on two macOS systems 10.13.6 (18-core iMac Pro) and 10.14.5 (2017 MBP, Quad-core Core i7).

Testing (‘ptestlong’) results:
10.13.6: one failure:
sage -t --long --warn-long 69.6 src/sage/libs/singular/polynomial.pyx
The “usual” failure: a lot of leaks. Singleton run passed.

10.14.5: all tests passed!

Justin

--
Justin C. Walker, Curmudgeon at Large
Institute for the Absorption of Federal Funds
-----------
While creating wives, God promised men
that good and obedient wives would be
found in all corners of the world.
Then He made the earth round.
--