Sage 9.1.rc0 released

[Volker Braun]

As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 

10ed24e3ed (trac/develop, tag: 9.1.rc0) Updated SageMath version to 9.1.rc0

b351e65d3d Trac #29475: Weil polynomials iterator is not handling coefficient constraints correctly

002aaa0be7 Trac #29471: Failing doctest in R interface due to missing lattice library

192efafcbd Trac #29455: Bug in incidence_matrix of CombinatorialPolyhedron

e8117be334 Trac #29418: sage-download-file: Fix certificate problems with https downloads from upstream_url when sage-system-python is XCode's python3 on macOS

0ddc9fe695 Trac #27354: Add assume() warning against chained comparisons

fb951e2854 Trac #29429: Upgrade numpy to 1.16.6 (last release supporting py2)  to fix numpy build error on local-conda-forge-macos-standard

5268007bdc Trac #29470: CharClasses - Doc

b696b289fa Trac #29465: asymptotics: sign error in cohomology decomposition

4101a2c073 Trac #29464: convert _cmp_ to _richcmp_ in fraction fields of Fp[T]

ef15e5f2a5 Trac #29462: Reject nauty version < 2.6

7327296670 Trac #29458: spkg-configure.m4 for libbraiding

258a86de6c Trac #29454: spkg-configure.m4 for ppl

1161b99975 Trac #29452: Pickling Frobenius endomorphism is broken

049edf9f5c Trac #29450: Follow up to #21785, use nodoctest instead of .nodoctest

ec1fcea768 Trac #29447: small regression in character art of dictionaries

8d4771eb27 Trac #29440: Improve doctests of Degenerate Submanifold

f1cff5bbe2 Trac #29439: remove several deprecated things

e8fd2db709 Trac #29438: Fix singular build error on local-debian-conda-forge-standard

d8a7579f8a Trac #29434: Extend Free Zinbiel algebra to allow infinite number of generators

7ff775fc59 Trac #29430: spkg-configure.m4 for flintqs

3aa29e765d Trac #29423: Have Lie subalgebras use the ambient basis ordering by default

88539d35d0 Trac #29415: tox.ini: Add environment local-conda

94b4e90e0d Trac #29398: Accept system (Open)BLAS

11a851d6dc Trac #29373: Upgrade freetype to 2.10.1 to fix installation on slackware-14.2

a1c396db85 Trac #29366: archlinux: Add missing system packages (arch.txt), add arch section to installation manual, fix detection of system packages

f38b753d9b Trac #29189: Migrate `is_lawrence_polytope` and `is_pyramid` to combinatorial polyhedron

e9f823c166 Trac #29087: Add GitHub Actions workflow for testing the build on various Linux distributions via docker; macOS with homebrew; and Windows (cygwin)

2e00b63443 Trac #28960: Initialize CombinatorialPolyhedron from incidence matrix of cone or lattice polytope

67d097db09 Trac #25698: Locally automorphous numbers of a genus

cc04e4caf2 Trac #12406: solve_left and solve_right should use coercion

f3631bbfd7 Trac #29445: Reject broken system PARI 2.11.3 and re-enable PARI library test in spkg-configure

5dff583b61 Trac #29389: Adjust eclib spkg-configure.m4 - to fix documentation build error on fedora-31-standard

beacece58f Trac #29272: doctest in padic_lattice_element.py gives error in current develop branch

171c10dcb5 Trac #28984: gfan - clash of log2 macro with standard library

f5af47ea84 Trac #26996: Copying package files: cannot overwrite non-directory

6008bf3f9a Trac #29451: PARI/GP segfault with XCode 11.4 on local-homebrew-macos-standard

aa3c9251cb Trac #29449: pkgconfig should depend on pkgconf

d35985fd5c Trac #29402: When SAGE_CHECK=warn, print warnings for failed test suites

af5db0482e Trac #29409: error when evaluating symbolic expression involving cotangent of a complex number

7e23e4fc6f Trac #29406: Remove documentation on creating old-style spkgs

1f7e16a72e Trac #29401: Add documentation of tox and GitHub actions workflow to developer's manual

bb0a91bd33 Trac #29391: preparser: update keywords for Python 3

3d7857d5ef Trac #29378: Update OpenBLAS to 0.3.9 - fixes build error of iml on fedora-32-standard

201816f94e Trac #29371: little tweak in mac-app

5759437aac Trac #29369: spkg-configure.m4 for brial

ff04513b75 Trac #29367: tox.ini: Add tests for python2

84d2576337 Trac #29351: Implement directed version of 2sweep algorithm for diameter computation

3dc31da88b Trac #29326: Improvements for projection into affine hull

0eb0746d83 Trac #29288: MagmaGBLogPrettyPrinter v Python3

8368828d51 Trac #29242: CombinatorialPolyhedron: `bit_repr_` -> `bit_rep_`

3673501c8f Trac #29190: Dual for combinatorial polyhedron

5aa7277403 Trac #28905: spkg-configure for cddlib

6a4580546f (tag: 9.1.beta9) Updated SageMath version to 9.1.beta9

[David Coudert]

Hello,

I have several issues with rc1 on osx mojave.

- I did incremental build from 9.1.beta9

- the library builds correctly, but not the documentation (see below)

- For the same reason, I have a crash when starting to start sage.

Any help is more than welcome.

David.

====================================================================

====================================================================

[sagelib-9.1.rc0] sys 0m2.740s

cd ../.. && sage-logger -p './sage --docbuild --no-pdf-links all html ' logs/dochtml.log

[dochtml] Traceback (most recent call last):

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/runpy.py", line 183, in _run_module_as_main

[dochtml]     mod_name, mod_spec, code = _get_module_details(mod_name, _Error)

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/runpy.py", line 142, in _get_module_details

[dochtml]     return _get_module_details(pkg_main_name, error)

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/runpy.py", line 109, in _get_module_details

[dochtml]     __import__(pkg_name)

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py", line 59, in <module>

[dochtml]     import sage.all

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/all.py", line 132, in <module>

[dochtml]     from sage.matrix.all     import *

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/__init__.py", line 2, in <module>

[dochtml]     import sage.matrix.args

[dochtml]   File "sage/matrix/args.pyx", line 23, in init sage.matrix.args (build/cythonized/sage/matrix/args.c:21219)

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_space.py", line 46, in <module>

[dochtml]     from . import matrix_modn_sparse

[dochtml]   File "sage/matrix/matrix_integer_sparse.pxd", line 5, in init sage.matrix.matrix_modn_sparse (build/cythonized/sage/matrix/matrix_modn_sparse.cpp:16354)

[dochtml]   File "sage/matrix/matrix_integer_dense.pxd", line 10, in init sage.matrix.matrix_integer_sparse (build/cythonized/sage/matrix/matrix_integer_sparse.cpp:15984)

[dochtml]   File "sage/matrix/matrix_rational_dense.pxd", line 4, in init sage.matrix.matrix_integer_dense (build/cythonized/sage/matrix/matrix_integer_dense.c:56363)

[dochtml] ImportError: dlopen(/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_rational_dense.cpython-37m-darwin.so, 2): Library not loaded: /Users/dcoudert/sage/local/lib/libopenblas_haswellp-r0.3.6.dylib

[dochtml]   Referenced from: /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_rational_dense.cpython-37m-darwin.so

[dochtml]   Reason: image not found

make[3]: *** [doc-html] Error 1

make[2]: *** [all-start] Error 2

real 1m14.753s

user 0m10.156s

sys 0m4.512s

====================================================================

====================================================================

the crash when starting a console:

confetti:sage dcoudert$ ./sage

┌────────────────────────────────────────────────────────────────────┐

│ SageMath version 9.1.rc0, Release Date: 2020-04-12                 │

│ Using Python 3.7.3. Type "help()" for help.                        │

└────────────────────────────────────────────────────────────────────┘

┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓

┃ Warning: this is a prerelease version, and it may be unstable.     ┃

┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛

---------------------------------------------------------------------------

---------------------------------------------------------------------------

ImportError            Python 3.7.3: /Users/dcoudert/sage/local/bin/python3

                                                   Mon Apr 13 16:35:42 2020

A problem occurred executing Python code.  Here is the sequence of function

calls leading up to the error, with the most recent (innermost) call last.

/Users/dcoudert/sage/src/bin/sage-ipython in <module>()

      1 #!/usr/bin/env sage-python

      2 # -*- coding: utf-8 -*-

      3 """

      4 Sage IPython startup script.

      5 """

      6 

      7 # Display startup banner. Do this before anything else to give the user

      8 # early feedback that Sage is starting.

      9 from sage.misc.banner import banner

     10 banner()

     11 

     12 from sage.repl.interpreter import SageTerminalApp

     13 

     14 app = SageTerminalApp.instance()

---> 15 app.initialize()

        global app.initialize = <bound method TerminalIPythonApp.initialize of <sage.repl.interpreter.SageTerminalApp object at 0x1043a5390>>

     16 app.start()

</Users/dcoudert/sage/local/lib/python3.7/site-packages/decorator.py:decorator-gen-110> in initialize(self=<sage.repl.interpreter.SageTerminalApp object>, argv=None)

/Users/dcoudert/sage/local/lib/python3.7/site-packages/traitlets/config/application.py in catch_config_error(method=<function TerminalIPythonApp.initialize>, app=<sage.repl.interpreter.SageTerminalApp object>, *args=(None,), **kwargs={})

     72     TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR = False

     73 else:

     74     raise ValueError("Unsupported value for environment variable: 'TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR' is set to '%s' which is none of  {'0', '1', 'false', 'true', ''}."% _envvar )

     75 

     76 

     77 @decorator

     78 def catch_config_error(method, app, *args, **kwargs):

     79     """Method decorator for catching invalid config (Trait/ArgumentErrors) during init.

     80 

     81     On a TraitError (generally caused by bad config), this will print the trait's

     82     message, and exit the app.

     83 

     84     For use on init methods, to prevent invoking excepthook on invalid input.

     85     """

     86     try:

---> 87         return method(app, *args, **kwargs)

        method = <function TerminalIPythonApp.initialize at 0x105374b70>

        app = <sage.repl.interpreter.SageTerminalApp object at 0x1043a5390>

        args = (None,)

        kwargs = {}

     88     except (TraitError, ArgumentError) as e:

     89         app.print_help()

     90         app.log.fatal("Bad config encountered during initialization:")

     91         app.log.fatal(str(e))

     92         app.log.debug("Config at the time: %s", app.config)

     93         app.exit(1)

     94 

     95 

     96 class ApplicationError(Exception):

     97     pass

     98 

     99 

    100 class LevelFormatter(logging.Formatter):

    101     """Formatter with additional `highlevel` record

    102 

/Users/dcoudert/sage/local/lib/python3.7/site-packages/IPython/terminal/ipapp.py in initialize(self=<sage.repl.interpreter.SageTerminalApp object>, argv=None)

    301 

    302         return super(TerminalIPythonApp, self).parse_command_line(argv)

    303     

    304     @catch_config_error

    305     def initialize(self, argv=None):

    306         """Do actions after construct, but before starting the app."""

    307         super(TerminalIPythonApp, self).initialize(argv)

    308         if self.subapp is not None:

    309             # don't bother initializing further, starting subapp

    310             return

    311         # print self.extra_args

    312         if self.extra_args and not self.something_to_run:

    313             self.file_to_run = self.extra_args[0]

    314         self.init_path()

    315         # create the shell

--> 316         self.init_shell()

        self.init_shell = <bound method SageTerminalApp.init_shell of <sage.repl.interpreter.SageTerminalApp object at 0x1043a5390>>

    317         # and draw the banner

    318         self.init_banner()

    319         # Now a variety of things that happen after the banner is printed.

    320         self.init_gui_pylab()

    321         self.init_extensions()

    322         self.init_code()

    323 

    324     def init_shell(self):

    325         """initialize the InteractiveShell instance"""

    326         # Create an InteractiveShell instance.

    327         # shell.display_banner should always be False for the terminal

    328         # based app, because we call shell.show_banner() by hand below

    329         # so the banner shows *before* all extension loading stuff.

    330         self.shell = self.interactive_shell_class.instance(parent=self,

    331                         profile_dir=self.profile_dir,

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/repl/interpreter.py in init_shell(self=<sage.repl.interpreter.SageTerminalApp object>)

    772         self.shell.has_sage_extensions = SAGE_EXTENSION in self.extensions

    773 

    774         # Load the %lprun extension if available

    775         try:

    776             import line_profiler

    777         except ImportError:

    778             pass

    779         else:

    780             self.extensions.append('line_profiler')

    781 

    782         if self.shell.has_sage_extensions:

    783             self.extensions.remove(SAGE_EXTENSION)

    784 

    785             # load sage extension here to get a crash if

    786             # something is wrong with the sage library

--> 787             self.shell.extension_manager.load_extension(SAGE_EXTENSION)

        self.shell.extension_manager.load_extension = <bound method ExtensionManager.load_extension of <IPython.core.extensions.ExtensionManager object at 0x1065ac2b0>>

        global SAGE_EXTENSION = 'sage'

    788 

    789 

/Users/dcoudert/sage/local/lib/python3.7/site-packages/IPython/core/extensions.py in load_extension(self=<IPython.core.extensions.ExtensionManager object>, module_str='sage')

     70 

     71         Returns the string "already loaded" if the extension is already loaded,

     72         "no load function" if the module doesn't have a load_ipython_extension

     73         function, or None if it succeeded.

     74         """

     75         if module_str in self.loaded:

     76             return "already loaded"

     77         

     78         from IPython.utils.syspathcontext import prepended_to_syspath

     79         

     80         with self.shell.builtin_trap:

     81             if module_str not in sys.modules:

     82                 with prepended_to_syspath(self.ipython_extension_dir):

     83                     __import__(module_str)

     84             mod = sys.modules[module_str]

---> 85             if self._call_load_ipython_extension(mod):

        self._call_load_ipython_extension = <bound method ExtensionManager._call_load_ipython_extension of <IPython.core.extensions.ExtensionManager object at 0x1065ac2b0>>

        mod = <module 'sage' from '/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/__init__.py'>

     86                 self.loaded.add(module_str)

     87             else:

     88                 return "no load function"

     89 

     90     def unload_extension(self, module_str):

     91         """Unload an IPython extension by its module name.

     92 

     93         This function looks up the extension's name in ``sys.modules`` and

     94         simply calls ``mod.unload_ipython_extension(self)``.

     95         

     96         Returns the string "no unload function" if the extension doesn't define

     97         a function to unload itself, "not loaded" if the extension isn't loaded,

     98         otherwise None.

     99         """

    100         if module_str not in self.loaded:

/Users/dcoudert/sage/local/lib/python3.7/site-packages/IPython/core/extensions.py in _call_load_ipython_extension(self=<IPython.core.extensions.ExtensionManager object>, mod=<module 'sage' from '/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/__init__.py'>)

    117         """

    118         from IPython.utils.syspathcontext import prepended_to_syspath

    119 

    120         if (module_str in self.loaded) and (module_str in sys.modules):

    121             self.unload_extension(module_str)

    122             mod = sys.modules[module_str]

    123             with prepended_to_syspath(self.ipython_extension_dir):

    124                 reload(mod)

    125             if self._call_load_ipython_extension(mod):

    126                 self.loaded.add(module_str)

    127         else:

    128             self.load_extension(module_str)

    129 

    130     def _call_load_ipython_extension(self, mod):

    131         if hasattr(mod, 'load_ipython_extension'):

--> 132             mod.load_ipython_extension(self.shell)

        mod.load_ipython_extension = <function load_ipython_extension at 0x1044398c8>

        self.shell = <sage.repl.interpreter.SageTerminalInteractiveShell object at 0x104308e10>

    133             return True

    134 

    135     def _call_unload_ipython_extension(self, mod):

    136         if hasattr(mod, 'unload_ipython_extension'):

    137             mod.unload_ipython_extension(self.shell)

    138             return True

    139 

    140     def install_extension(self, url, filename=None):

    141         """Download and install an IPython extension. 

    142 

    143         If filename is given, the file will be so named (inside the extension

    144         directory). Otherwise, the name from the URL will be used. The file must

    145         have a .py or .zip extension; otherwise, a ValueError will be raised.

    146 

    147         Returns the full path to the installed file.

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/__init__.py in load_ipython_extension(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell object>,))

      1 __all__ = ['all']

      2 

      3 # Set sage.__version__ to the current version number. This is analogous

      4 # to many other Python packages.

      5 from sage.version import version as __version__

      6 

      7 # Make sure that the correct zlib library is loaded. This is needed

      8 # to prevent the system zlib to be loaded instead of the Sage one.

      9 # See https://trac.sagemath.org/ticket/23122

     10 import zlib

     11 

     12 # IPython calls this when starting up

     13 def load_ipython_extension(*args):

     14     import sage.repl.ipython_extension

---> 15     sage.repl.ipython_extension.load_ipython_extension(*args)

        sage.repl.ipython_extension.load_ipython_extension = <function load_ipython_extension at 0x106c6f0d0>

        args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at 0x104308e10>,)

     16 

     17 

     18 # Monkey-patch inspect.isfunction() to support Cython functions.

     19 def isfunction(obj):

     20     """

     21     Check whether something is a function.

     22 

     23     We assume that anything which has a genuine ``__code__``

     24     attribute (not using ``__getattr__`` overrides) is a function.

     25     This is meant to support Cython functions.

     26 

     27     EXAMPLES::

     28 

     29         sage: from inspect import isfunction

     30         sage: def f(): pass

     31         sage: isfunction(f)

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/repl/ipython_extension.py in wrapper(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell object>,), **kwargs={})

    549         ....:     if work:

    550         ....:         return 'foo worked'

    551         ....:     raise RuntimeError("foo didn't work")

    552         sage: foo(False)

    553         Traceback (most recent call last):

    554         ...

    555         RuntimeError: foo didn't work

    556         sage: foo(True)

    557         'foo worked'

    558         sage: foo(False)

    559         sage: foo(True)

    560     """

    561     @wraps(func)

    562     def wrapper(*args, **kwargs):

    563         if not wrapper.has_run:

--> 564             result = func(*args, **kwargs)

        result = undefined

        global func = undefined

        args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at 0x104308e10>,)

        kwargs = {}

    565             wrapper.has_run = True

    566             return result

    567     wrapper.has_run = False

    568     return wrapper

    569 

    570 

    571 @run_once

    572 def load_ipython_extension(ip):

    573     """

    574     Load the extension in IPython.

    575     """

    576     # this modifies ip

    577     SageCustomizations(shell=ip)

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/repl/ipython_extension.py in load_ipython_extension(ip=<sage.repl.interpreter.SageTerminalInteractiveShell object>)

    562     def wrapper(*args, **kwargs):

    563         if not wrapper.has_run:

    564             result = func(*args, **kwargs)

    565             wrapper.has_run = True

    566             return result

    567     wrapper.has_run = False

    568     return wrapper

    569 

    570 

    571 @run_once

    572 def load_ipython_extension(ip):

    573     """

    574     Load the extension in IPython.

    575     """

    576     # this modifies ip

--> 577     SageCustomizations(shell=ip)

        global SageCustomizations = <class 'sage.repl.ipython_extension.SageCustomizations'>

        global shell = undefined

        ip = <sage.repl.interpreter.SageTerminalInteractiveShell object at 0x104308e10>

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/repl/ipython_extension.py in __init__(self=<sage.repl.ipython_extension.SageCustomizations object>, shell=<sage.repl.interpreter.SageTerminalInteractiveShell object>)

    420     def __init__(self, shell=None):

    421         """

    422         Initialize the Sage plugin.

    423         """

    424         self.shell = shell

    425 

    426         self.auto_magics = SageMagics(shell)

    427         self.shell.register_magics(self.auto_magics)

    428 

    429         import sage.misc.edit_module as edit_module

    430         self.shell.set_hook('editor', edit_module.edit_devel)

    431 

    432         self.init_inspector()

    433         self.init_line_transforms()

    434 

--> 435         import sage.all # until sage's import hell is fixed

        sage.all = undefined

    436 

    437         self.shell.verbose_quit = True

    438         self.set_quit_hook()

    439 

    440         self.register_interface_magics()

    441 

    442         if SAGE_IMPORTALL == 'yes':

    443             self.init_environment()

    444 

    445     def register_interface_magics(self):

    446         """

    447         Register magics for each of the Sage interfaces

    448         """

    449         from sage.repl.interface_magic import InterfaceMagic

    450         InterfaceMagic.register_all(self.shell)

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/all.py in <module>()

    117 import sage.misc.lazy_import

    118 

    119 from sage.misc.all       import *         # takes a while

    120 from sage.typeset.all    import *

    121 from sage.repl.all       import *

    122 

    123 from sage.misc.sh import sh

    124 

    125 from sage.libs.all       import *

    126 from sage.data_structures.all import *

    127 from sage.doctest.all    import *

    128 

    129 from sage.structure.all  import *

    130 from sage.rings.all      import *

    131 from sage.arith.all      import *

--> 132 from sage.matrix.all     import *

        global sage.matrix.all = undefined

    133 

    134 from sage.symbolic.all   import *

    135 from sage.modules.all    import *

    136 from sage.monoids.all    import *

    137 from sage.algebras.all   import *

    138 from sage.modular.all    import *

    139 from sage.sat.all        import *

    140 from sage.schemes.all    import *

    141 from sage.graphs.all     import *

    142 from sage.groups.all     import *

    143 from sage.arith.power    import generic_power as power

    144 from sage.databases.all  import *

    145 from sage.categories.all import *

    146 from sage.sets.all       import *

    147 from sage.probability.all import *

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/__init__.py in <module>()

      1 # Resolve a cyclic import

----> 2 import sage.matrix.args

        global sage.matrix.args = undefined

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/args.pyx in init sage.matrix.args (build/cythonized/sage/matrix/args.c:21219)()

      8 #       Copyright (C) 2018 Jeroen Demeyer <J.De...@UGent.be>

      9 #

     10 # This program is free software: you can redistribute it and/or modify

     11 # it under the terms of the GNU General Public License as published by

     12 # the Free Software Foundation, either version 2 of the License, or

     13 # (at your option) any later version.

     14 #                  http://www.gnu.org/licenses/

     15 #*****************************************************************************

     16 

     17 cimport cython

     18 from cpython.sequence cimport PySequence_Fast

     19 from cysignals.signals cimport sig_check

     20 from cypari2.gen cimport Gen

     21 from cypari2.types cimport typ, t_MAT, t_VEC, t_COL, t_VECSMALL, t_LIST, t_STR, t_CLOSURE

     22 

---> 23 from .matrix_space import MatrixSpace

        global matrix_space = undefined

        global MatrixSpace = undefined

     24 from sage.rings.all import ZZ, RDF, CDF

     25 from sage.structure.coerce cimport (coercion_model,

     26         is_numpy_type, py_scalar_parent)

     27 from sage.structure.element cimport Element, RingElement, Vector

     28 from sage.arith.long cimport pyobject_to_long

     29 from sage.misc.misc_c import sized_iter

     30 from sage.categories import monoids

     31 

     32 

     33 CommutativeMonoids = monoids.Monoids().Commutative()

     34 

     35 

     36 cdef inline bint element_is_scalar(Element x):

     37     """

     38     Should this element be considered a scalar (as opposed to a vector)?

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_space.py in <module>()

     31 # (at your option) any later version.

     32 #                  https://www.gnu.org/licenses/

     33 # ****************************************************************************

     34 from __future__ import print_function, absolute_import

     35 from six.moves import range

     36 from six import iteritems, integer_types

     37 

     38 # System imports

     39 import sys

     40 import operator

     41 

     42 # Sage matrix imports

     43 from . import matrix_generic_dense

     44 from . import matrix_generic_sparse

     45 

---> 46 from . import matrix_modn_sparse

        global matrix_modn_sparse = undefined

     47 

     48 from . import matrix_mod2_dense

     49 from . import matrix_gf2e_dense

     50 

     51 from . import matrix_integer_dense

     52 from . import matrix_integer_sparse

     53 

     54 from . import matrix_rational_dense

     55 from . import matrix_rational_sparse

     56 

     57 from . import matrix_polynomial_dense

     58 from . import matrix_mpolynomial_dense

     59 

     60 # Sage imports

     61 import sage.structure.coerce

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_integer_sparse.pxd in init sage.matrix.matrix_modn_sparse (build/cythonized/sage/matrix/matrix_modn_sparse.cpp:16354)()

      1 from sage.modules.vector_integer_sparse cimport mpz_vector

      2 from sage.ext.mod_int cimport mod_int

      3 from .matrix_sparse cimport Matrix_sparse

      4 

----> 5 cdef class Matrix_integer_sparse(Matrix_sparse):

        global cdef = undefined

        global Matrix_integer_sparse = undefined

        global Matrix_sparse = undefined

      6     cdef mpz_vector* _matrix

      7 

      8     cdef _mod_int_c(self, mod_int p)

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_integer_dense.pxd in init sage.matrix.matrix_integer_sparse (build/cythonized/sage/matrix/matrix_integer_sparse.cpp:15984)()

      1 from sage.libs.gmp.types cimport *

      2 from sage.libs.flint.types cimport fmpz_mat_t

      3 

      4 from .matrix_dense cimport Matrix_dense

      5 from sage.rings.integer cimport Integer

      6 from sage.ext.mod_int cimport *

      7 

      8 ctypedef long* GEN

      9 

---> 10 cdef class Matrix_integer_dense(Matrix_dense):

        global cdef = undefined

        global Matrix_integer_dense = undefined

        global Matrix_dense = undefined

     11     cdef fmpz_mat_t _matrix

     12     cdef object _pivots

     13     cdef int mpz_height(self, mpz_t height) except -1

     14     cdef _mod_int_c(self, mod_int modulus)

     15     cdef _mod_two(self)

     16     cdef _pickle_version0(self)

     17     cdef _unpickle_version0(self, data)

     18     cpdef _export_as_string(self, int base=?)

     19     cdef void set_unsafe_mpz(self, Py_ssize_t i, Py_ssize_t j, const mpz_t value)

     20     cdef void set_unsafe_si(self, Py_ssize_t i, Py_ssize_t j, long value)

     21     cdef void set_unsafe_double(self, Py_ssize_t i, Py_ssize_t j, double value)

     22     cdef inline void get_unsafe_mpz(self, Py_ssize_t i, Py_ssize_t j, mpz_t value)

     23     cdef inline double get_unsafe_double(self, Py_ssize_t i, Py_ssize_t j)

     24 

     25     # HNF Modn

     26     cdef int _hnf_modn(Matrix_integer_dense self, Matrix_integer_dense res,

     27             unsigned int det) except -1

     28     cdef int* _hnf_modn_impl(Matrix_integer_dense self, unsigned int det,

     29             Py_ssize_t nrows, Py_ssize_t ncols) except NULL

     30 

     31     cdef Matrix_integer_dense _new(self, Py_ssize_t nrows, Py_ssize_t ncols)

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_rational_dense.pxd in init sage.matrix.matrix_integer_dense (build/cythonized/sage/matrix/matrix_integer_dense.c:56363)()

      1 from sage.libs.flint.types cimport fmpz_t, fmpq_mat_t

      2 from .matrix_dense cimport Matrix_dense

      3 

----> 4 cdef class Matrix_rational_dense(Matrix_dense):

        global cdef = undefined

        global Matrix_rational_dense = undefined

        global Matrix_dense = undefined

      5     cdef fmpq_mat_t _matrix

      6 

      7     cdef int fmpz_denom(self, fmpz_t d) except -1

      8     cdef int fmpz_height(self, fmpz_t height) except -1

      9 #    cdef int _rescale(self, mpq_t a) except -1

     10 

     11     cdef _pickle_version0(self)

     12     cdef _unpickle_version0(self, data)

     13     cpdef _export_as_string(self, int base=?)

     14 

     15     cdef _add_ui_unsafe_assuming_int(self, Py_ssize_t i, Py_ssize_t j, unsigned long int n)

     16     cdef _sub_ui_unsafe_assuming_int(self, Py_ssize_t i, Py_ssize_t j, unsigned long int n)

     17 

     18     cdef inline Matrix_rational_dense _new_matrix(self, Py_ssize_t nrows, Py_ssize_t ncols)

     19 

     20 cdef class MatrixWindow:

     21     cdef Matrix_rational_dense _matrix

     22     cdef int _row, _col, _nrows, _ncols

ImportError: dlopen(/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_rational_dense.cpython-37m-darwin.so, 2): Library not loaded: /Users/dcoudert/sage/local/lib/libopenblas_haswellp-r0.3.6.dylib

  Referenced from: /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_rational_dense.cpython-37m-darwin.so

  Reason: image not found

**********************************************************************

Oops, Sage crashed. We do our best to make it stable, but...

A crash report was automatically generated with the following information:

  - A verbatim copy of the crash traceback.

  - A copy of your input history during this session.

  - Data on your current Sage configuration.

It was left in the file named:

'/Users/dcoudert/.sage/ipython-5.0.0/Sage_crash_report.txt'

If you can email this file to the developers, the information in it will help

them in understanding and correcting the problem.

You can mail it to: sage-support at sage-s...@googlegroups.com

with the subject 'Sage Crash Report'.

If you want to do it now, the following command will work (under Unix):

mail -s 'Sage Crash Report' sage-s...@googlegroups.com < /Users/dcoudert/.sage/ipython-5.0.0/Sage_crash_report.txt

In your email, please also include information about:

- The operating system under which the crash happened: Linux, macOS, Windows,

  other, and which exact version (for example: Ubuntu 16.04.3, macOS 10.13.2,

  Windows 10 Pro), and whether it is 32-bit or 64-bit;

- How Sage was installed: using pip or conda, from GitHub, as part of

  a Docker container, or other, providing more detail if possible;

- How to reproduce the crash: what exact sequence of instructions can one

  input to get the same crash? Ideally, find a minimal yet complete sequence

  of instructions that yields the crash.

To ensure accurate tracking of this issue, please file a report about it at:

http://trac.sagemath.org

Hit <Enter> to quit (your terminal may close):

--
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To unsubscribe from this group and stop receiving emails from it, send an email to sage-release...@googlegroups.com.
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[Matthias Köppe]

On Monday, April 13, 2020 at 7:41:58 AM UTC-7, David Coudert wrote:

I have several issues with rc1 on osx mojave.

- I did incremental build from 9.1.beta9

- the library builds correctly, but not the documentation (see below)

- For the same reason, I have a crash when starting to start sage.

[dochtml]   File "sage/matrix/matrix_rational_dense.pxd", line 4, in init sage.matrix.matrix_integer_dense (build/cythonized/sage/matrix/matrix_integer_dense.c:56363)

[dochtml] ImportError: dlopen(/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_rational_dense.cpython-37m-darwin.so, 2): Library not loaded: /Users/dcoudert/sage/local/lib/libopenblas_haswellp-r0.3.6.dylib

[dochtml]   Referenced from: /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/matrix/matrix_rational_dense.cpython-37m-darwin.so

This might be https://trac.sagemath.org/ticket/28008 (Linking OpenBLAS wrong on OSX).

Try if it persists after "make distclean"

 

[Matthias Köppe]

On Sunday, April 12, 2020 at 3:37:55 PM UTC-7, Volker Braun wrote:

As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 

10ed24e3ed (trac/develop, tag: 9.1.rc0) Updated SageMath version to 9.1.rc0

If you are testing on macOS, I recommend to merge #29404 and #29408 which missed the 9.1.rc0 bus and fix critical failures observed in 9.1.beta9.

[Matthias Köppe]

On Sunday, April 12, 2020 at 3:37:55 PM UTC-7, Volker Braun wrote:
>

> As always, you can get the latest beta version from the "develop" git
> branch. Alternatively, the self-contained source tarball is at
> http://www.sagemath.org/download-latest.html
>
> 10ed24e3ed (trac/develop, tag: 9.1.rc0) Updated SageMath version to 9.1.rc0
>

Skip to conten
<https://github.com/mkoeppe/sage/actions/runs/76923542#start-of-content>

Run SAGE_ROOT/tox.ini
<https://github.com/mkoeppe/sage/actions/runs/76923542>on: pull_request
docker (ubuntu-trusty, minimal)
<https://github.com/mkoeppe/sage/runs/581877374?check_suite_focus=true>
docker (ubuntu-trusty, standard)
<https://github.com/mkoeppe/sage/runs/581877390?check_suite_focus=true>
docker (ubuntu-trusty, standard-python2)
<https://github.com/mkoeppe/sage/runs/581877408?check_suite_focus=true>
docker (ubuntu-xenial, minimal)
<https://github.com/mkoeppe/sage/runs/581877431?check_suite_focus=true>
docker (ubuntu-xenial, standard)
<https://github.com/mkoeppe/sage/runs/581877458?check_suite_focus=true>
docker (ubuntu-xenial, standard-python2)
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docker (ubuntu-bionic, minimal)
<https://github.com/mkoeppe/sage/runs/581877505?check_suite_focus=true>
docker (ubuntu-bionic, standard)
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docker (ubuntu-bionic, standard-python2)
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docker (ubuntu-eoan, minimal)
<https://github.com/mkoeppe/sage/runs/581877569?check_suite_focus=true>
docker (ubuntu-eoan, standard)
<https://github.com/mkoeppe/sage/runs/581877581?check_suite_focus=true>
docker (ubuntu-eoan, standard-python2)
<https://github.com/mkoeppe/sage/runs/581877592?check_suite_focus=true>
docker (ubuntu-focal, minimal)
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docker (ubuntu-focal, standard)
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docker (ubuntu-focal, standard-python2)
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docker (debian-jessie, minimal)
<https://github.com/mkoeppe/sage/runs/581877632?check_suite_focus=true>
docker (debian-jessie, standard)
<https://github.com/mkoeppe/sage/runs/581877642?check_suite_focus=true>
docker (debian-jessie, standard-python2)
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<https://github.com/mkoeppe/sage/runs/581877663?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877684?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877693?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877704?check_suite_focus=true>
docker (debian-buster, standard-python2)
<https://github.com/mkoeppe/sage/runs/581877715?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877725?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877732?check_suite_focus=true>
docker (debian-bullseye, standard-python2)
<https://github.com/mkoeppe/sage/runs/581877740?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877748?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877753?check_suite_focus=true>
docker (debian-sid, standard-python2)
<https://github.com/mkoeppe/sage/runs/581877763?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877771?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877775?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877786?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877793?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877798?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877803?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877809?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877818?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877824?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877828?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877924?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877928?check_suite_focus=true>
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<https://github.com/mkoeppe/sage/runs/581877933?check_suite_focus=true>
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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu pkgconf planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack fplll gfan givaro gp2c isl lcalc libbraiding libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack fplll gfan givaro gp2c isl lcalc libbraiding libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu pkgconf planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (debian-jessie, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-jessie-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu pkgconf planarity ppl python3 r rw yasm zeromq

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<https://github.com/mkoeppe/sage/commit/39b80351a4f82f9fd396ccdb880a36185304b7c5#annotation_164956914>

[image: @github-actions]github-actions/ docker (debian-jessie,
standard-python2)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-jessie-standard-python2/logs/ptest.log ====

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[image: @github-actions]github-actions/ docker (debian-jessie,
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artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-jessie-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu pkgconf planarity ppl python3 r rw yasm zeromq

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[image: @github-actions]github-actions/ docker (debian-stretch, minimal)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-stretch-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (debian-stretch, standard)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-stretch-standard/logs/ptest.log ====

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<https://github.com/mkoeppe/sage/commit/39b80351a4f82f9fd396ccdb880a36185304b7c5#annotation_164961435>

[image: @github-actions]github-actions/ docker (debian-stretch, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-stretch-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack flint fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups mpc mpfi mpfr ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu ppl python3 r zeromq

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[image: @github-actions]github-actions/ docker (debian-stretch,
standard-python2)

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[image: @github-actions]github-actions/ docker (debian-stretch,
standard-python2)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-stretch-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack flint fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups mpc mpfi mpfr ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu ppl python3 r zeromq

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[image: @github-actions]github-actions/ docker (debian-buster, minimal)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-buster-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (debian-buster, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-buster-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: cbc cddlib cmake eclib fflas_ffpack fplll givaro isl libsemigroups ninja_build perl_term_readline_gnu

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[image: @github-actions]github-actions/ docker (debian-buster, standard)

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[image: @github-actions]github-actions/ docker (debian-buster,
standard-python2)

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[image: @github-actions]github-actions/ docker (debian-buster,
standard-python2)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-buster-standard-python2/config.log#L1

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[image: @github-actions]github-actions/ docker (debian-bullseye, minimal)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-bullseye-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (debian-bullseye, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-bullseye-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: cbc cddlib cmake eclib fflas_ffpack fplll gp2c isl lcalc libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu

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[image: @github-actions]github-actions/ docker (debian-bullseye,
standard-python2)

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configure: notice: the following SPKGs did not find equivalent system packages: cbc cddlib cmake eclib fflas_ffpack fplll gp2c isl lcalc libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3

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[image: @github-actions]github-actions/ docker (debian-bullseye,
standard-python2)

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[image: @github-actions]github-actions/ docker (debian-sid, minimal)

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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standard-python2)

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configure: notice: the following SPKGs did not find equivalent system packages: cbc cddlib cmake fflas_ffpack fplll isl libsemigroups ninja_build perl_term_readline_gnu python3

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[image: @github-actions]github-actions/ docker (debian-sid,
standard-python2)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-debian-sid-standard-python2/logs/ptest.log ====

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[image: @github-actions]github-actions/ docker (linuxmint-17, minimal)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-17-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu pkgconf planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (linuxmint-17, minimal)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-17-minimal/logs/ptest.log ====

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-17-standard/logs/ptest.log ====

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[image: @github-actions]github-actions/ docker (linuxmint-17, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-17-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu pkgconf planarity ppl python3 r rw sqlite symmetrica yasm zeromq

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[image: @github-actions]github-actions/ docker (linuxmint-17,
standard-python2)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-17-standard-python2/logs/ptest.log ====

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[image: @github-actions]github-actions/ docker (linuxmint-17,
standard-python2)

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu pkgconf planarity ppl python3 r rw sqlite symmetrica yasm zeromq

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<https://github.com/mkoeppe/sage/commit/39b80351a4f82f9fd396ccdb880a36185304b7c5#annotation_165179699>

[image: @github-actions]github-actions/ docker (linuxmint-18, minimal)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-18-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (linuxmint-18, standard)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-18-standard/logs/ptest.log ====

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[image: @github-actions]github-actions/ docker (linuxmint-18, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-18-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r zeromq

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[image: @github-actions]github-actions/ docker (linuxmint-18, standard)

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r zeromq

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<https://github.com/mkoeppe/sage/commit/39b80351a4f82f9fd396ccdb880a36185304b7c5#annotation_165107952>

[image: @github-actions]github-actions/ docker (linuxmint-18,
standard-python2)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-18-standard-python2/logs/ptest.log ====

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<https://github.com/mkoeppe/sage/commit/39b80351a4f82f9fd396ccdb880a36185304b7c5#annotation_165107953>

[image: @github-actions]github-actions/ docker (linuxmint-18,
standard-python2)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-18-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r zeromq

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[image: @github-actions]github-actions/ docker (linuxmint-19, minimal)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-19-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (linuxmint-19, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-19-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack fplll gfan givaro gp2c isl lcalc libbraiding libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-19-standard/logs/ptest.log ====

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[image: @github-actions]github-actions/ docker (linuxmint-19,
standard-python2)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-19-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack fplll gfan givaro gp2c isl lcalc libbraiding libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3

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.github#L1

Process completed with exit code 1.

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[image: @github-actions]github-actions/ docker (linuxmint-19,
standard-python2)

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[image: @github-actions]github-actions/ docker (linuxmint-19.3, minimal)

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (linuxmint-19.3, minimal)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-19.3-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (linuxmint-19.3, minimal)

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (linuxmint-19.3, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-19.3-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack fplll gfan givaro gp2c isl lcalc libbraiding libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu

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[image: @github-actions]github-actions/ docker (linuxmint-19.3, standard)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-19.3-standard/logs/ptest.log ====

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[image: @github-actions]github-actions/ docker (linuxmint-19.3,
standard-python2)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-19.3-standard-python2/logs/ptest.log ====

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[image: @github-actions]github-actions/ docker (linuxmint-19.3,
standard-python2)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-linuxmint-19.3-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack fplll gfan givaro gp2c isl lcalc libbraiding libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3

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[image: @github-actions]github-actions/ docker (fedora-26, minimal)

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (fedora-26, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-26-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc mpc mpfi mpfr ninja_build openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r symmetrica zeromq

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[image: @github-actions]github-actions/ docker (fedora-26, standard-python2)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-26-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups mpc mpfi mpfr ninja_build openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r symmetrica zeromq

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[image: @github-actions]github-actions/ docker (fedora-27, minimal)

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (fedora-27, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-27-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups m4ri m4rie mpc mpfi mpfr ninja_build openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r zeromq

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc mpc mpfi mpfr ninja_build openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r zeromq

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[image: @github-actions]github-actions/ docker (fedora-28, minimal)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-28-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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[image: @github-actions]github-actions/ docker (fedora-28, standard)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-28-standard/logs/ptest.log ====

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==== ERROR IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-28-standard/logs/pkgs/sagetex-3.4.log ====

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[image: @github-actions]github-actions/ docker (fedora-28, standard)

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configure: notice: the following SPKGs did not find equivalent system packages: arb brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro glpk gp2c isl lcalc libbraiding libsemigroups mpc mpfi mpfr ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu ppl python3 zeromq

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[image: @github-actions]github-actions/ docker (fedora-28, standard-python2)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-28-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb brial cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro glpk gp2c isl lcalc libbraiding libsemigroups mpc mpfi mpfr ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu ppl python3 zeromq

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[image: @github-actions]github-actions/ docker (fedora-28, standard-python2)

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-28-standard-python2/logs/ptest.log ====

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<https://github.com/mkoeppe/sage/commit/39b80351a4f82f9fd396ccdb880a36185304b7c5#annotation_165079954>
<https://github.com/mkoeppe/sage/commit/39b80351a4f82f9fd396ccdb880a36185304b7c5#annotation_165079954>

[image: @github-actions]github-actions/ docker (fedora-28, standard-python2)

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==== ERROR IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-28-standard-python2/logs/pkgs/sagetex-3.4.log ====

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[image: @github-actions]github-actions/ docker (fedora-29, minimal)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-29-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro gp2c isl lcalc libbraiding libsemigroups mpc mpfi mpfr ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3 zeromq

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro gp2c isl lcalc libbraiding libsemigroups mpc mpfi mpfr ninja_build perl_term_readline_gnu python3

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro gp2c isl lcalc libbraiding libsemigroups mpc mpfi mpfr ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3

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configure: notice: the following SPKGs did not find equivalent system packages: arb cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro gp2c isl lcalc libbraiding libsemigroups mpc mpfi mpfr ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3

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configure: notice: the following SPKGs did not find equivalent system packages: arb cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro gp2c isl lcalc libbraiding libsemigroups mpc mpfi mpfr ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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==== ERROR IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-32-standard/logs/pkgs/scipy-1.2.0.log ====

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artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-32-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb cbc cddlib cmake eclib ecm fflas_ffpack flintqs gp2c isl lcalc libbraiding libsemigroups mpfi ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3

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.github#L1

Process completed with exit code 1.

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artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-centos-7-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu pkgconf planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libgd libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu pkgconf planarity ppl python3 r rw sqlite symmetrica tachyon yasm zeromq

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artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-centos-7-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libgd libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu pkgconf planarity ppl python3 r rw sqlite symmetrica tachyon yasm zeromq

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artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-centos-8-minimal/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r rw symmetrica tachyon yasm zeromq

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configure: notice: the following SPKGs did not find equivalent system packages: arb brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r rw symmetrica tachyon yasm zeromq

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configure: notice: the following SPKGs did not find equivalent system packages: arb brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r rw symmetrica tachyon yasm zeromq

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[image: @github-actions]github-actions/ docker (centos-8, standard-python2)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-centos-8-standard-python2/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r rw symmetrica tachyon yasm zeromq

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configure: notice: the following SPKGs did not find equivalent system packages: arb brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r rw symmetrica tachyon yasm zeromq

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[image: @github-actions]github-actions/ docker (centos-8, standard-python2)

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configure: notice: the following SPKGs did not find equivalent system packages: arb brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r rw symmetrica tachyon yasm zeromq

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libgd libpng libsemigroups lrcalc m4ri m4rie mpfi nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small patch perl_term_readline_gnu planarity ppl python3 r rw symmetrica tachyon yasm zeromq

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==== ERROR IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-archlinux-latest-minimal/logs/pkgs/openblas-0.3.9.log ====

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configure: notice: the following SPKGs did not find equivalent system packages: cbc cliquer cmake ecm fflas_ffpack fplll git givaro gp2c isl libatomic_ops libsemigroups mpfi ninja_build perl_term_readline_gnu python3 yasm zeromq

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[image: @github-actions]github-actions/ docker (archlinux-latest,
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configure: notice: the following SPKGs did not find equivalent system packages: cbc cliquer cmake ecm fflas_ffpack fplll git givaro gp2c isl libatomic_ops libsemigroups mpfi ninja_build perl_term_readline_gnu python3 yasm zeromq

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[image: @github-actions]github-actions/ docker (archlinux-latest,
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configure: notice: the following SPKGs did not find equivalent system packages: cbc cliquer cmake ecm fflas_ffpack fplll git givaro gp2c isl libatomic_ops libsemigroups mpfi ninja_build perl_term_readline_gnu python3 yasm zeromq

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==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-archlinux-latest-standard-python2/logs/ptest.log ====

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r rw symmetrica tachyon zeromq

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[image: @github-actions]github-actions/ docker (slackware-14.2,
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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr nauty ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu planarity ppl python3 r rw symmetrica tachyon zeromq

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[image: @github-actions]github-actions/ docker (slackware-14.2,
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==== ERROR IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-slackware-14.2-standard-python2/logs/pkgs/fflas_ffpack-2.4.3.log ====

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Exit code 143 returned from process: file name '/home/runner/runners/2.168.0/bin/Runner.PluginHost', arguments 'action "GitHub.Runner.Plugins.Artifact.PublishArtifact, Runner.Plugins"'.

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial bzip2 cbc cddlib cliquer cmake curl eclib ecm fflas_ffpack flint flintqs fplll freetype gf2x gfan gfortran git givaro glpk gp2c gsl isl lcalc libatomic_ops libbraiding libffi libgd libpng libsemigroups lrcalc m4ri m4rie mpc mpfi mpfr mpir nauty ncurses ninja_build ntl openblas pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small pcre perl_term_readline_gnu planarity ppl python3 r readline rw sqlite symmetrica tachyon xz yasm zeromq zlib

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack fplll gfan givaro gp2c isl lcalc libbraiding libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu

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Exit code 143 returned from process: file name '/home/runner/runners/2.168.0/bin/Runner.PluginHost', arguments 'action "GitHub.Runner.Plugins.Artifact.PublishArtifact, Runner.Plugins"'.

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configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cmake eclib fflas_ffpack fplll gfan givaro gp2c isl lcalc libbraiding libsemigroups ninja_build pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_term_readline_gnu python3

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Exit code 143 returned from process: file name '/home/runner/runners/2.168.0/bin/Runner.PluginHost', arguments 'action "GitHub.Runner.Plugins.Artifact.PublishArtifact, Runner.Plugins"'.

[Harald Schilly]

I tried to build 9.1.rc0 clean from git sources, but it fails at brial

it tries to get e.g.
http://ftp.leg.uct.ac.za/pub/packages/sage/spkg/upstream/sage_brial/brial-1.2.5.tar.bz2
but fails

the path I found is
http://sage.mirror.garr.it/mirrors/sage/spkg/upstream/brial/...
though.

the diff is "brial" vs "sage_brial"

... or maybe something is wrong with my repo. git status is clean and
HEAD is at 10ed24e3ed0b5440624d5f1a9b18d2f8f89d8126

-- harald

[Dima Pasechnik]

On Tue, Apr 14, 2020 at 9:13 PM Harald Schilly <har...@schil.ly> wrote:
>
> I tried to build 9.1.rc0 clean from git sources, but it fails at brial
>
> it tries to get e.g.
> http://ftp.leg.uct.ac.za/pub/packages/sage/spkg/upstream/sage_brial/brial-1.2.5.tar.bz2

get the upstream brial tarball, i.e.
http://ftp.leg.uct.ac.za/pub/packages/sage/spkg/upstream/brial/brial-1.2.5.tar.bz2
and put it in upstream/

sage_brial and brial are built from the same tarball, but URLs are
different on mirrors, and one of them
is broken.

If you know how to fix it, please do.
(it's the same story as gfortran spkg, which is built from the gcc spkg tarball)

> but fails
>
> the path I found is
> http://sage.mirror.garr.it/mirrors/sage/spkg/upstream/brial/...
> though.
>
> the diff is "brial" vs "sage_brial"
>
> ... or maybe something is wrong with my repo. git status is clean and
> HEAD is at 10ed24e3ed0b5440624d5f1a9b18d2f8f89d8126
>
> -- harald
>

> --
> You received this message because you are subscribed to the Google Groups "sage-release" group.
> To unsubscribe from this group and stop receiving emails from it, send an email to sage-release...@googlegroups.com.

> To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAGG4CB5bh5zCnhQSN4RcxMbT3Zra0bnj6SPTWofB0UPEmad5vA%40mail.gmail.com.

[Harald Schilly]

well, I don't know anything about how these upstream spkgs are
uploaded, but I have access to the server. I created a symlink from
sage_brial to brial. That should help!

> To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq13VtJG%3DTSc%2BhAo8LU1qe-RG_-qf182N1uL%2Bnh7V1VCag%40mail.gmail.com.

[Samuel Lelievre]

Can you say how to merge #29404 and #29408

on top of 9.1.rc0 to get things to work in macOS?

I am on macOS 10.14.6 and I have not been able

to build a single version of Sage after 9.0.

[Matthias Köppe]

On Tuesday, April 14, 2020 at 7:42:26 AM UTC-7, Samuel Lelievre wrote:

Le lundi 13 avril 2020 17:35:58 UTC+2, Matthias Köppe a écrit :

If you are testing on macOS, I recommend to merge #29404 and #29408

which missed the 9.1.rc0 bus and fix critical failures observed in 9.1.beta9.

Can you say how to merge #29404 and #29408

on top of 9.1.rc0 to get things to work in macOS?

git trac fetch 29404 && git merge FETCH_HEAD

git trac fetch 29408 && git merge FETCH_HEAD

[Justin C. Walker]

> On Apr 12, 2020, at 15:37 , Volker Braun <vbrau...@gmail.com> wrote:
>
> As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

Built, without problems, from fresh clones of the develop tree on three macOS systems:
10.13.6 (18-core Xeon W, 2017 iMac Pro)
10.14.6 (4-core Core i7, 2017 MBP)
10.15.4 (9-core Core i9, 2019 MBP)

All tests passed (‘ptestlong’) on 10.13.6 and 10.15.4.
On 10.14.6, I had one failure, a timeout, which I attribute to my inability to persuade these systems to avoid sleeping. I reran the testing (without a rebuild) with no failures.

Justin

PS: These are all more-or-less plain vanilla macOS systems, with no third-party package managers.

--
Justin C. Walker, Curmudgeon-At-Large
Institute for the Enhancement of the Director's Income
--------
Experience is what you get
when you don't get what you want.
--------

[darwin doppelganger]

"make sage" failed for the first time in several versions on my MacBook Pro, macOS Mojave,10.14.6. But after "make distclean", the build succeeded and then "make ptestlong" also completed successfully.

[Matthias Köppe]

On Monday, April 13, 2020 at 2:05:30 PM UTC-7, Matthias Köppe wrote:

On Sunday, April 12, 2020 at 3:37:55 PM UTC-7, Volker Braun wrote:
>
> As always, you can get the latest beta version from the "develop" git
> branch. Alternatively, the self-contained source tarball is at
> http://www.sagemath.org/download-latest.html
>
> 10ed24e3ed (trac/develop, tag: 9.1.rc0) Updated SageMath version to 9.1.rc0

<https://github.com/mkoeppe/sage/actions/runs/76923542#start-of-content>

The above link leads to a page that summarizes an automatic test run of Sage on 100 platforms/system configurations (and gives access to full logs), using the testing framework described at https://wiki.sagemath.org/ReleaseTours/sage-9.1#Sage_9.1_Release_Tour, running on GitHub Actions.

Here's how to read it.

Each of the 100 items in the left pane represents a full build of Sage on a particular system configuration.

For example, 

- "docker (ubuntu-bionic, standard)" is a build with python 3 on ubuntu bionic with many system packages equivalent to our SPKGs installed;

- "docker (ubuntu-bionic, minimal)" is the same but only with a minimal set of system packages installed, so we build most of our standard packages from scratch.

A test item in the left pane is marked with a green checkmark in the left pane if "make build doc-html" finished without error.  (It also runs package testsuites and the Sage doctests but these are ; see below)

The right pane  ("Artifacts") offers archives of the logs for download.

Scrolling down in the right pane shows "Annotations":

* Red "check failure" annotations appear for each log file that contains a build error. For example, you might see:

github-actions/ docker (fedora-28, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-28-standard/logs/pkgs/sagetex-3.4.log#L1

   ==== ERROR IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-28-standard/logs/pkgs/sagetex-3.4.log ====

* Yellow "check warning" annotations. There are 2 types of these:

  a) Package testsuite / Sage doctest failures

github-actions/ docker (fedora-30, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-30-standard/logs/ptest.log#L1

    ==== TESTSUITE FAILURE IN LOG FILE artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-30-standard/logs/ptest.log ====

  b) Notices from ./configure about not finding equivalent system packages

github-actions/ docker (fedora-31, standard)

artifacts/logs-commit-8ca1c2df8f1fb4c6d54b44b34b4d8320ebecb164-tox-docker-fedora-31-standard/config.log#L1

configure: notice: the following SPKGs did not find equivalent system packages: arb cbc cddlib cmake eclib ecm fflas_ffpack flint flintqs fplll givaro gp

Clicking on the annotations does not take you to a very useful place. To view details, click on one of the items in the pane. This changes the right pane to a log viewer. 

[Matthias Köppe]

On Sunday, April 12, 2020 at 3:37:55 PM UTC-7, Volker Braun wrote:

As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 

Ubuntu/Debian/LinuxMint failures from https://github.com/mkoeppe/sage/actions/runs/76923542:

 

Ubuntu

ubuntu-{bionic, eoan}-minimal: OpenBLAS testsuite failure. 

gfortran -O2 -Wall -frecursive -fno-optimize-sibling-calls -m64  -march=skylake-avx512 -L/sage/local/lib -Wl,-rpath,/sage/local/lib  -o zblat1 zblat1.o ../libopenblas_skylakexp-r0.3.9.a -lm -lpthread -lgfortran -lm -lpthread -lgfortran -L/sage/local/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/sage/local/lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../..  -lc  

../libopenblas_skylakexp-r0.3.9.a: file not recognized: File truncated

ubtuntu-eoan-standard: 

File "src/sage/libs/eclib/interface.py", line 359, in sage.libs.eclib.interface.mwrank_EllipticCurve.?

Failed example:

    EllipticCurve([0, prod(prime_range(100))]).mwrank_curve().two_descent()

Debian

debian-buster-standard

sage -t src/sage/schemes/hyperelliptic_curves/hyperelliptic_finite_field.py  # 2 doctests failed

debian-sid-standard-python2

sage -t src/sage/lfunctions/dokchitser.py  # 2 doctests failed

sage -t src/sage/lfunctions/pari.py  # 1 doctest failed

sage -t src/sage/rings/number_field/number_field_element.pyx  # 1 doctest failed

sage -t src/sage/rings/number_field/number_field.py  # 7 doctests failed

sage -t src/sage/rings/number_field/number_field_ideal.py  # 2 doctests failed

sage -t src/sage/rings/number_field/unit_group.py  # 1 doctest failed

sage -t src/sage/rings/polynomial/polynomial_quotient_ring.py  # 2 doctests failed

sage -t src/sage/schemes/elliptic_curves/ell_number_field.py  # 2 doctests failed

LinuxMint

linuxmint-17-{minimal,standard}

many doctest failures because of messages "bash: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)"

linuxmint-19-standard

  [future-0.17.1]   Copying package files from temporary location /sage/local/var/tmp/sage/build/future-0.17.1/inst to /sage/local

  [future-0.17.1]   cp: cannot create regular file '/sage/local/./lib/python2.7/site-packages/future/__init__.pyc': File exists

  [future-0.17.1]   ************************************************************************

  [future-0.17.1]   Error copying files for future-0.17.1.

  [future-0.17.1]   ************************************************************************

  [future-0.17.1] Full log file: /sage/logs/pkgs/future-0.17.1.log

(Sporadic failure not specific to this platform -- likely https://trac.sagemath.org/ticket/26018)

[David Coudert]

It took me some time (installation of multiple packages to use system packages, including openblas), but I'm making progresses.

So, after a dust-clean, I can compile and start a sage console. It's working.

However, I still have issues building the documentation, but the problem is different:

[dochtml] [knots    ] build réussi, 13 warnings.

[dochtml] [knots    ] The inventory files are in local/share/doc/sage/inventory/en/reference/knots.

[dochtml] Build finished. The built documents can be found in /Users/dcoudert/sage/local/share/doc/sage/inventory/en/reference/knots

[dochtml] [lfunction] building [inventory]: targets for 5 source files that are out of date

[dochtml] [lfunction] updating environment: 5 added, 0 changed, 0 removed

[dochtml] [lfunction] pickling environment... fait

[dochtml] [lfunction] checking consistency... fait

[dochtml] [lfunction] preparing documents... fait

[dochtml] [lfunction] dumping object inventory... fait

[dochtml] [lfunction] build réussi, 1 warning.

[dochtml] [lfunction] The inventory files are in local/share/doc/sage/inventory/en/reference/lfunctions.

[dochtml] Build finished. The built documents can be found in /Users/dcoudert/sage/local/share/doc/sage/inventory/en/reference/lfunctions

[dochtml] /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py:1048: DeprecationWarning: The Sage wrappers around ppl are now superseded by the standalone pplpy. Please use import 'ppl' instead of 'sage.libs.ppl'.

[dochtml] See http://trac.sagemath.org/23024 for details.

[dochtml]   title = self.get_module_docstring_title(module_name)

[dochtml] /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py:1048: DeprecationWarning: the module sage.libs.ratpoints is deprecated; use pari.ellratpoints or pari.hyperellratpoints instead

[dochtml] See http://trac.sagemath.org/24531 for details.

[dochtml]   title = self.get_module_docstring_title(module_name)

[dochtml] Warning: Could not import sage.libs.readline dlopen(/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so, 2): Symbol not found: _rl_catch_signals

[dochtml]   Referenced from: /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so

[dochtml]   Expected in: flat namespace

[dochtml]  in /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so

[dochtml] [libs     ] building [inventory]: targets for 41 source files that are out of date

[dochtml] [libs     ] updating environment: 41 added, 0 changed, 0 removed

[dochtml] [libs     ] WARNING: autodoc: failed to import module 'readline' from module 'sage.libs'; the following exception was raised:

[dochtml] [libs     ] dlopen(/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so, 2): Symbol not found: _rl_catch_signals

[dochtml] [libs     ]   Referenced from: /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so

[dochtml] [libs     ]   Expected in: flat namespace

[dochtml] [libs     ]  in /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so

[dochtml] [libs     ] pickling environment... fait

[dochtml] [libs     ] checking consistency... fait

[dochtml] [libs     ] preparing documents... fait

[dochtml] [libs     ] dumping object inventory... fait

[dochtml] [libs     ] build réussi, 1 warning.

[dochtml] [libs     ] The inventory files are in local/share/doc/sage/inventory/en/reference/libs.

[dochtml] Error building the documentation.

[dochtml] Traceback (most recent call last):

[dochtml]   File "/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/lib/python3.7/runpy.py", line 193, in _run_module_as_main

[dochtml]     "__main__", mod_spec)

[dochtml]   File "/usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/lib/python3.7/runpy.py", line 85, in _run_code

[dochtml]     exec(code, run_globals)

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__main__.py", line 2, in <module>

[dochtml]     main()

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py", line 1720, in main

[dochtml]     builder()

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py", line 327, in _wrapper

[dochtml]     getattr(get_builder(document), 'inventory')(*args, **kwds)

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py", line 552, in _wrapper

[dochtml]     self._build_everything_except_bibliography(lang, format, *args, **kwds)

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py", line 538, in _build_everything_except_bibliography

[dochtml]     build_many(build_ref_doc, non_references)

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py", line 280, in build_many

[dochtml]     _build_many(target, args, processes=NUM_THREADS)

[dochtml]   File "/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/utils.py", line 283, in build_many

[dochtml]     raise worker_exc.original_exception

[dochtml] OSError: WARNING: autodoc: failed to import module 'readline' from module 'sage.libs'; the following exception was raised:

make[3]: *** [doc-html] Error 1

make[2]: *** [all-start] Error 2

real 85m38.601s

user 52m45.327s

sys 6m54.402s

***************************************************************

Error building Sage.

The following package(s) may have failed to build (not necessarily

during this run of 'make all-start'):

* documentation:         dochtml

  last build time: 15 avr 11:02

  log file:        /Users/dcoudert/sage/logs/pkgs/../dochtml.log

It is safe to delete any log files and build directories, but they

contain information that is helpful for debugging build problems.

WARNING: If you now run 'make' again, the build directory of the

same version of the package will, by default, be deleted. Set the

environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.

make[1]: *** [all-start] Error 1

make: *** [all] Error 2

[Dima Pasechnik]

Do you have readline installed in Homebrew?

what is the output of

otool -L /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so

?

the problem might be that for some reason the lacking MacOS "fake" readline
is picked up here.

[David Coudert]

Le 15 avr. 2020 à 11:27, Dima Pasechnik <dim...@gmail.com> a écrit :

Do you have readline installed in Homebrew?

yes

confetti:sage dcoudert$ ls /usr/local/opt/

0mq                    ecm                    gts                    libjpeg                o-caml                 r

alluxio                flint                  htop                   libjpg                 ocaml                  readline

arb                    fontconfig             htop-osx               libmpc                 openblas               shared-mime-info

autoconf               freetype               icu4c                  libomp                 openexr                sqlite

auto...@2.69          gcc                    ilmbase                libpng                 openjpeg               sqlite3

automake               gcc@9                  imagemagick            libtiff                openssl                tachyon

boost                  gd                     imagemagick@7          libtool                openssl@1.0            unison

bo...@1.72             gdbm                   isl                    libunistring           openssl@1.1            unrar

cbc                    gettext                jasper                 little-cms2            osi                    webp

cddlib                 gfan                   jpeg                   m4ri                   pcre                   wget

cgl                    glib                   lcms2                  mpfi                   pcre1                  x265

clp                    glpk                   libde265               mpfr                   pkg-config             xz

cmake                  gmp                    libffi                 mpir                   pkgconfig              yasm

coin_data_netlib       gnu-scientific-library libgd                  ncurses                ppl                    zeromq

coin_data_sample       gpatch                 libheif                netpbm                 python                 zmq

coinutils              graphviz               libiconv               ninja                  python3

doxygen                gsl                    libidn2                ntl                    python@3.8

what is the output of

otool -L /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so

?

the problem might be that for some reason the lacking MacOS "fake" readline
is picked up here.

confetti:sage dcoudert$ otool -L /Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so

/Users/dcoudert/sage/local/lib/python3.7/site-packages/sage/libs/readline.cpython-37m-darwin.so:

/usr/lib/libiconv.2.dylib (compatibility version 7.0.0, current version 7.0.0)

/usr/lib/libedit.3.dylib (compatibility version 2.0.0, current version 3.0.0)

/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1252.250.1)

and 

confetti:sage dcoudert$ echo $PATH

/usr/local/opt/gettext/bin/:/Library/Frameworks/Python.framework/Versions/2.7/bin:/Users/dcoudert/sage/git-trac-command/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/Users/dcoudert/bin:/opt/local/bin:/opt/local/sbin

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[Dima Pasechnik]

yes, libedit is a "fake" readline.
What is your python3 ? (there are options: one from Xcode, one from
pythn.org, one from Homebrew, one built by Sage?)

> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1252.250.1)
>
>
> and
> confetti:sage dcoudert$ echo $PATH
> /usr/local/opt/gettext/bin/:/Library/Frameworks/Python.framework/Versions/2.7/bin:/Users/dcoudert/sage/git-trac-command/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/Users/dcoudert/bin:/opt/local/bin:/opt/local/sbin
>
>
>
>
>
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[Dima Pasechnik]

On Wed, Apr 15, 2020 at 5:37 PM David Coudert <david....@gmail.com> wrote:
>
>
>

that /Library/Frameworks/Python.framework/Versions/2.7/bin looks fishy...
Are you still using python2 for something?

>
>
>
>
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[David Coudert]

For the version of Python 3 used during conflation,  ./configure, says

-----------------------------------------------------------------------------

Checking whether SageMath should install SPKG python3...

checking whether any of sqlite libpng bzip2 xz libffi is installed as or will be installed as SPKG... no

checking for python3 >= 3.7.3, < 3.8 with modules sqlite3, ctypes, math, hashlib, crypt, readline, socket, zlib, distutils.core... 

checking ... whether /usr/local/bin/python3.7 is good... yes

checking for python3 >= 3.7.3, < 3.8 with modules sqlite3, ctypes, math, hashlib, crypt, readline, socket, zlib, distutils.core... /usr/local/bin/python3.7

configure: will use system package and not install SPKG python3

-----------------------------------------------------------------------------

confetti:sage dcoudert$ echo $PATH
/usr/local/opt/gettext/bin/:/Library/Frameworks/Python.framework/Versions/2.7/bin:/Users/dcoudert/sage/git-trac-command/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/Users/dcoudert/bin:/opt/local/bin:/opt/local/sbin

that /Library/Frameworks/Python.framework/Versions/2.7/bin looks fishy...
Are you still using python2 for something?

I don’t know. I checked .bash_profile, and I’m not including this path. My only additions are

export PATH=$PATH:$HOME/bin
export PATH=/usr/local/opt/gettext/bin/:$PATH

David.

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[Sébastien Labbé]

Running tests with few optional and external packages, here is what I get:

Using --optional=4ti2,cbc,ccache,cryptominisat,dot2tex,e_antic,external,glucose,latte_int,lidia,lrslib,memlimit,

normaliz,notedown,openssl,pandoc_attributes,pycosat,pynormaliz,rst2ipynb,sage,sage_numerical_backends_coin,

sage_numerical_backends_cplex,sage_numerical_backends_gurobi

----------------------------------------------------------------------
sage -t --long src/sage/databases/findstat.py  # 8 doctests failed
sage -t --long src/sage/databases/oeis.py  # 1 doctest failed
sage -t --long src/sage/geometry/polyhedron/base.py  # Bad exit: 1
sage -t --long src/sage/graphs/generators/smallgraphs.py  # 2 doctests failed
sage -t --long src/sage/plot/animate.py  # 7 doctests failed
----------------------------------------------------------------------
External software detected for doctesting: cplex,ffmpeg,graphviz,gurobi,imagemagick,internet,latex,pandoc

Rerunning failed tests, I get the same. No new issues here.

Progress on few of the issues was done recently. They have positive review here: https://trac.sagemath.org/ticket/25536

[Thierry]

Hi,

the ticket https://trac.sagemath.org/ticket/28915 about upgrading
openssl to 1.1.1f was closed recently, but is not yet merged.

A high security fix was uploaded today, so that we have to upgrade to
1.1.1g I opened https://trac.sagemath.org/ticket/29546 for that.

My question is : should i make the commit over the 9.1.rc0 branch or
over the dd8e2baf7ba1fbd8bbbb9cec076133279249f1c1 commit or over a merge
of both ?

Ciao,
Thierry

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[Matthias Köppe]

New ticket with a branch on top of the old commit.

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