CC genotypes

Richard Radcliffe

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Feb 11, 2022, 5:29:07 PM2/11/22

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Hello,

Do you know if genotypes are available for any of the CC strains other than the 69 from the Srivastava et al. publication? Looks like sequence and haplotype data are available for all of the strains, but not filtered genotype data.

Thanks,

Richard

Karl Broman

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Feb 12, 2022, 8:41:00 AM2/12/22

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If you find any, I'll be glad to try to merge them into the qtl2data repository, https://github.com/rqtl/qtl2data

karl

Richard Radcliffe

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Feb 15, 2022, 12:32:02 PM2/15/22

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Is there any reason why one couldn't generate CC-strain genotypes from UNC's hap maps and the founder genotypes? There's still some residual heterozygosity in the newer strains, so that might cause a bit of a problem, although I suppose you could code those regions as missing data.

Karl Broman

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Feb 15, 2022, 12:33:41 PM2/15/22

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Yes, I'm sure it can be done.

karl

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