Multi Ploidy

[Joseph Sevigny]

Hello,

I was just curious to ask if I should be aware of anything when running redundans with a non-diploid organism. Have you done any testing with polyploidy organisms? I am not sure if it allows greater than two 'redundant' contigs or if will only compare the two most similar.

Thanks,

Joe

[l.p.p...@gmail.com]

Hi Joe, Redundans doesn't assume any ploidy. It will reduce all heterozygous regions at given --identity and --overlap criteria, so in principle you should recover contigs from haploid genome. 

Let me know how it worked!

L. 

L.

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