ParGenes - Type Error after parsing command line

[jaqueli...@gmail.com]

Hi there,

I am trying to get a copy of ParGenes installed and I'm running into what looks like may be an issue with parsing the command line.

For example,

python ~/Software/ParGenes/pargenes/pargenes.py -a FASTA_test/ -o test/ --dry-run

throws the following error:

after parse:
[Error] <class 'TypeError'> '<' not supported between instances of 'NoneType' and 'int'

python ~/Software/ParGenes/pargenes/pargenes.py -h  runs fine.

I've tried both the manual install and the conda version. My Python version is 3.8.3.

Any ideas what might be going wrong here?

Thank you very much for your help!

Jacky

[Jaqueline Hess]

OK, solved it - I went by the information provided by the -h flag when constructing the command line which lists -c (cores) and -d (datatype) as optional arguments. Ended up digging through the code and then finding the "minimum command" line in the wiki that states that these are always required, also with --dry-run so my bad. It's a little difficult to figure out from this error message.

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