Hi Nicolas,
thanks for sending the files!
I can confirm there is a problem, and it looks very similar to the one which has been already
reported, which I am however still investigating and do not have a final fix yet.
In the meantime, you can use a simple workaround, just add
--blopt nr_safe
option to the command line.
As a side note, I would recommend reducing the number of bootstrap replicates, you can use e.g.
--bs-tree autoMRE{5000}
to perform automatic bootstrap convergence test.
Best,
Alexey
On 29.09.21 01:51, Nicolás Peñafiel wrote:
> Hi Alexey, thanks for looking into it.
> Here is the code I used:
>
> #!/bin/bash
>
> #SBATCH --job-name=boots_TVM_3
>
> #SBATCH --time=0-3:00:00
>
> #SBATCH --cpus-per-task=8
>
> #SBATCH --mem=1G
>
> module load StdEnv/2020 gcc/9.3.0 openmpi/4.0.3 raxml-ng/1.0.1
>
> export OMP_NUM_THREADS=*"${SLURM_CPUS_PER_TASK:-1}"*
>
> raxml-ng*--bootstrap --msa* TVM.raxml.rba*--model* TVM+I+G4 *--seed* 11*--threads*
> *${OMP_NUM_THREADS}**--prefix* TVM_BS_3*--bs-trees* 5000
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