INLA Crashes around Index Table Entry
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Olanrewaju Lawal
May 16, 2022, 2:42:19 AM5/16/22
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Hi
I am running the prediction part of my model, the prediction is for the study area. The model was constructed successfully. The prediction keeps crashing, with no clear indication of what the error is. Her eis the code
p.res.pred<-inla(formula, data=inla.stack.data(stk.full,spde=spde),family= 'binomial',
Ntrials = n,
control.predictor=list(link = 1, A=inla.stack.A(stk.full),compute=TRUE),
control.compute = list(dic = TRUE, config = FALSE),
verbose = TRUE)
Ntrials = n,
control.predictor=list(link = 1, A=inla.stack.A(stk.full),compute=TRUE),
control.compute = list(dic = TRUE, config = FALSE),
verbose = TRUE)
Below is the output
Read ntt 4 1 with max.threads 8
Found num.threads = 4:1 max_threads = 4
file: src/inla.c 770fd3bf230ee6f56b07b40276712783a6ce895c - Sun Nov 21 18:53:10 2021 +0300
Report bugs to <he...@r-inla.org>
Set reordering to id=[0] and name=[default]
Process file[C:\Users\olala\AppData\Local\Temp\RtmpmoQIL8\file42d863176f35/Model.ini] threads[4] max.threads[8] blas_threads[1] nested[4:1]
inla_build...
number of sections=[15]
parse section=[0] name=[INLA.libR] type=[LIBR]
inla_parse_libR...
section[INLA.libR]
R_HOME=[C:/PROGRA~1/R/R-40~1.3]
parse section=[12] name=[INLA.Expert] type=[EXPERT]
inla_parse_expert...
section[INLA.Expert]
disable.gaussian.check=[0]
cpo.manual=[0]
jp.file=[(null)]
jp.model=[(null)]
parse section=[1] name=[INLA.Model] type=[PROBLEM]
inla_parse_problem...
name=[INLA.Model]
R-INLA version=[21.11.22]
R-INLA build date=[Sun Nov 21 06:58:54 PM +03 2021 (Version_21.11.22)]
Build tag=[Version_21.11.22]
openmp.strategy=[default]
pardiso-library installed and working? = [no]
smtp = [taucs]
strategy = [default]
store results in directory=[C:\Users\olala\AppData\Local\Temp\RtmpmoQIL8\file42d863176f35/results.files]
output:
cpo=[0]
po=[0]
dic=[1]
kld=[1]
mlik=[1]
q=[0]
graph=[0]
hyperparameters=[1]
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[3] name=[Predictor] type=[PREDICTOR]
inla_parse_predictor ...
section=[Predictor]
dir=[predictor]
PRIOR->name=[loggamma]
hyperid=[53001|Predictor]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 1e-05]
initialise log_precision[13.8155]
fixed=[1]
user.scale=[1]
vb.correct=[0]
n=[927922]
m=[928253]
ndata=[928253]
compute=[1]
read offsets from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd]
read n=[3712350] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 0/1856175 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 1/1856175 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 2/1856175 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 3/1856175 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 4/1856175 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 5/1856175 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 6/1856175 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 7/1856175 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 8/1856175 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 9/1856175 (idx,y) = (9, 0)
read link.fitted.values from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6]
read n=[3712350] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 0/1856175 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 1/1856175 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 2/1856175 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 3/1856175 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 4/1856175 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 5/1856175 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 6/1856175 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 7/1856175 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 8/1856175 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 9/1856175 (idx,y) = (9, 0)
A=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d835cebde]
Aext=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d871401637]
AextPrecision=[3.269e+06]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[2] name=[INLA.Data1] type=[DATA]
inla_parse_data [section 1]...
tag=[INLA.Data1]
family=[BINOMIAL]
likelihood=[BINOMIAL]
file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d86174596]
file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81b846549]
file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d820be393a]
file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d818b01b8e]
read n=[192] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d86174596]
mdata.nattributes = 0
0/64 (idx,a,y,d) = (0, 412, 340, 1)
1/64 (idx,a,y,d) = (1, 216, 65, 1)
2/64 (idx,a,y,d) = (2, 100, 90, 1)
3/64 (idx,a,y,d) = (3, 299, 4, 1)
4/64 (idx,a,y,d) = (4, 114, 67, 1)
5/64 (idx,a,y,d) = (5, 617, 433, 1)
6/64 (idx,a,y,d) = (6, 538, 113, 1)
7/64 (idx,a,y,d) = (7, 469, 60, 1)
8/64 (idx,a,y,d) = (8, 216, 41, 1)
9/64 (idx,a,y,d) = (9, 216, 56, 1)
likelihood.variant=[0]
Link model [LOGIT]
Link order [-1]
Link variant [-1]
Link a [1]
Link ntheta [0]
mix.use[0]
parse section=[10] name=[spatial.field] type=[FFIELD]
inla_parse_ffield...
section=[spatial.field]
dir=[random.effect00000001]
model=[spde2]
PRIOR0->name=[mvnorm]
hyperid=[23001|spatial.field]
PRIOR0->from_theta=[function (x) <<NEWLINE>>x]
PRIOR0->to_theta = [function (x) <<NEWLINE>>x]
PRIOR0->PARAMETERS0[0]=[-1.27923]
PRIOR0->PARAMETERS0[1]=[0.0137208]
PRIOR0->PARAMETERS0[2]=[0.1]
PRIOR0->PARAMETERS0[3]=[0]
PRIOR0->PARAMETERS0[4]=[0]
PRIOR0->PARAMETERS0[5]=[0.1]
vb.correct=[-1]
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<not present>
compute=[1]
nrep=[1]
ngroup=[1]
read covariates from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 0/927922 (idx,y) = (0, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 1/927922 (idx,y) = (1, 44)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 2/927922 (idx,y) = (2, 45)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 3/927922 (idx,y) = (3, 61)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 4/927922 (idx,y) = (4, 73)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 5/927922 (idx,y) = (5, 76)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 6/927922 (idx,y) = (6, 77)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 7/927922 (idx,y) = (7, 87)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 8/927922 (idx,y) = (8, 89)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 9/927922 (idx,y) = (9, 90)
spde2.prefix = [C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d863316bce/file42d859468e3.]
spde2.transform = [identity]
ntheta (max) = [2]
initialise theta[0]=[-1.27923]
fixed[0]=[0]
initialise theta[1]=[0.0137208]
fixed[1]=[0]
ntheta (used) = [2]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[4] name=[Intercept] type=[LINEAR]
inla_parse_linear...
section[Intercept]
dir=[fixed.effect00000001]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 0/927922 (idx,y) = (0, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 1/927922 (idx,y) = (1, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 2/927922 (idx,y) = (2, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 3/927922 (idx,y) = (3, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 4/927922 (idx,y) = (4, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 5/927922 (idx,y) = (5, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 6/927922 (idx,y) = (6, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 7/927922 (idx,y) = (7, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 8/927922 (idx,y) = (8, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 9/927922 (idx,y) = (9, 1)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[5] name=[Access] type=[LINEAR]
inla_parse_linear...
section[Access]
dir=[fixed.effect00000002]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[6] name=[Elevation] type=[LINEAR]
inla_parse_linear...
section[Elevation]
dir=[fixed.effect00000003]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[7] name=[EVI] type=[LINEAR]
inla_parse_linear...
section[EVI]
dir=[fixed.effect00000004]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[8] name=[LST_day] type=[LINEAR]
inla_parse_linear...
section[LST_day]
dir=[fixed.effect00000005]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[9] name=[Rain] type=[LINEAR]
inla_parse_linear...
section[Rain]
dir=[fixed.effect00000006]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[14] name=[INLA.pardiso] type=[PARDISO]
inla_parse_pardiso...
section[INLA.pardiso]
verbose[0]
debug[0]
parallel.reordering[1]
nrhs[-1]
parse section=[13] name=[INLA.lp.scale] type=[LP.SCALE]
inla_parse_lp_scale...
section[INLA.lp.scale]
Index table: number of entries[9], total length[1856623]
tag start-index length
APredictor 0 928253
Predictor 928253 927922
spatial.Error in inla.inlaprogram.has.crashed() :
The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.
If this does not help, please contact the developers at <he...@r-inla.org>
Found num.threads = 4:1 max_threads = 4
file: src/inla.c 770fd3bf230ee6f56b07b40276712783a6ce895c - Sun Nov 21 18:53:10 2021 +0300
Report bugs to <he...@r-inla.org>
Set reordering to id=[0] and name=[default]
Process file[C:\Users\olala\AppData\Local\Temp\RtmpmoQIL8\file42d863176f35/Model.ini] threads[4] max.threads[8] blas_threads[1] nested[4:1]
inla_build...
number of sections=[15]
parse section=[0] name=[INLA.libR] type=[LIBR]
inla_parse_libR...
section[INLA.libR]
R_HOME=[C:/PROGRA~1/R/R-40~1.3]
parse section=[12] name=[INLA.Expert] type=[EXPERT]
inla_parse_expert...
section[INLA.Expert]
disable.gaussian.check=[0]
cpo.manual=[0]
jp.file=[(null)]
jp.model=[(null)]
parse section=[1] name=[INLA.Model] type=[PROBLEM]
inla_parse_problem...
name=[INLA.Model]
R-INLA version=[21.11.22]
R-INLA build date=[Sun Nov 21 06:58:54 PM +03 2021 (Version_21.11.22)]
Build tag=[Version_21.11.22]
openmp.strategy=[default]
pardiso-library installed and working? = [no]
smtp = [taucs]
strategy = [default]
store results in directory=[C:\Users\olala\AppData\Local\Temp\RtmpmoQIL8\file42d863176f35/results.files]
output:
cpo=[0]
po=[0]
dic=[1]
kld=[1]
mlik=[1]
q=[0]
graph=[0]
hyperparameters=[1]
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[3] name=[Predictor] type=[PREDICTOR]
inla_parse_predictor ...
section=[Predictor]
dir=[predictor]
PRIOR->name=[loggamma]
hyperid=[53001|Predictor]
PRIOR->from_theta=[function (x) <<NEWLINE>>exp(x)]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR->PARAMETERS=[1, 1e-05]
initialise log_precision[13.8155]
fixed=[1]
user.scale=[1]
vb.correct=[0]
n=[927922]
m=[928253]
ndata=[928253]
compute=[1]
read offsets from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd]
read n=[3712350] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 0/1856175 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 1/1856175 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 2/1856175 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 3/1856175 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 4/1856175 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 5/1856175 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 6/1856175 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 7/1856175 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 8/1856175 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82d4c1bfd] 9/1856175 (idx,y) = (9, 0)
read link.fitted.values from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6]
read n=[3712350] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 0/1856175 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 1/1856175 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 2/1856175 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 3/1856175 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 4/1856175 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 5/1856175 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 6/1856175 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 7/1856175 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 8/1856175 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d84d7666e6] 9/1856175 (idx,y) = (9, 0)
A=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d835cebde]
Aext=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d871401637]
AextPrecision=[3.269e+06]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[2] name=[INLA.Data1] type=[DATA]
inla_parse_data [section 1]...
tag=[INLA.Data1]
family=[BINOMIAL]
likelihood=[BINOMIAL]
file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d86174596]
file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81b846549]
file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d820be393a]
file->name=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d818b01b8e]
read n=[192] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d86174596]
mdata.nattributes = 0
0/64 (idx,a,y,d) = (0, 412, 340, 1)
1/64 (idx,a,y,d) = (1, 216, 65, 1)
2/64 (idx,a,y,d) = (2, 100, 90, 1)
3/64 (idx,a,y,d) = (3, 299, 4, 1)
4/64 (idx,a,y,d) = (4, 114, 67, 1)
5/64 (idx,a,y,d) = (5, 617, 433, 1)
6/64 (idx,a,y,d) = (6, 538, 113, 1)
7/64 (idx,a,y,d) = (7, 469, 60, 1)
8/64 (idx,a,y,d) = (8, 216, 41, 1)
9/64 (idx,a,y,d) = (9, 216, 56, 1)
likelihood.variant=[0]
Link model [LOGIT]
Link order [-1]
Link variant [-1]
Link a [1]
Link ntheta [0]
mix.use[0]
parse section=[10] name=[spatial.field] type=[FFIELD]
inla_parse_ffield...
section=[spatial.field]
dir=[random.effect00000001]
model=[spde2]
PRIOR0->name=[mvnorm]
hyperid=[23001|spatial.field]
PRIOR0->from_theta=[function (x) <<NEWLINE>>x]
PRIOR0->to_theta = [function (x) <<NEWLINE>>x]
PRIOR0->PARAMETERS0[0]=[-1.27923]
PRIOR0->PARAMETERS0[1]=[0.0137208]
PRIOR0->PARAMETERS0[2]=[0.1]
PRIOR0->PARAMETERS0[3]=[0]
PRIOR0->PARAMETERS0[4]=[0]
PRIOR0->PARAMETERS0[5]=[0.1]
vb.correct=[-1]
correct=[-1]
constr=[0]
diagonal=[0]
id.names=<not present>
compute=[1]
nrep=[1]
ngroup=[1]
read covariates from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 0/927922 (idx,y) = (0, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 1/927922 (idx,y) = (1, 44)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 2/927922 (idx,y) = (2, 45)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 3/927922 (idx,y) = (3, 61)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 4/927922 (idx,y) = (4, 73)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 5/927922 (idx,y) = (5, 76)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 6/927922 (idx,y) = (6, 77)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 7/927922 (idx,y) = (7, 87)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 8/927922 (idx,y) = (8, 89)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82e45ba9] 9/927922 (idx,y) = (9, 90)
spde2.prefix = [C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d863316bce/file42d859468e3.]
spde2.transform = [identity]
ntheta (max) = [2]
initialise theta[0]=[-1.27923]
fixed[0]=[0]
initialise theta[1]=[0.0137208]
fixed[1]=[0]
ntheta (used) = [2]
computed/guessed rank-deficiency = [0]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[4] name=[Intercept] type=[LINEAR]
inla_parse_linear...
section[Intercept]
dir=[fixed.effect00000001]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 0/927922 (idx,y) = (0, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 1/927922 (idx,y) = (1, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 2/927922 (idx,y) = (2, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 3/927922 (idx,y) = (3, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 4/927922 (idx,y) = (4, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 5/927922 (idx,y) = (5, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 6/927922 (idx,y) = (6, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 7/927922 (idx,y) = (7, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 8/927922 (idx,y) = (8, 1)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d842026686] 9/927922 (idx,y) = (9, 1)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[5] name=[Access] type=[LINEAR]
inla_parse_linear...
section[Access]
dir=[fixed.effect00000002]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d87af55255] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[6] name=[Elevation] type=[LINEAR]
inla_parse_linear...
section[Elevation]
dir=[fixed.effect00000003]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d81d266e7c] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[7] name=[EVI] type=[LINEAR]
inla_parse_linear...
section[EVI]
dir=[fixed.effect00000004]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d82255411a] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[8] name=[LST_day] type=[LINEAR]
inla_parse_linear...
section[LST_day]
dir=[fixed.effect00000005]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d864a9408a] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
section=[9] name=[Rain] type=[LINEAR]
inla_parse_linear...
section[Rain]
dir=[fixed.effect00000006]
file for covariates=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7]
read n=[1855844] entries from file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7]
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 0/927922 (idx,y) = (0, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 1/927922 (idx,y) = (1, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 2/927922 (idx,y) = (2, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 3/927922 (idx,y) = (3, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 4/927922 (idx,y) = (4, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 5/927922 (idx,y) = (5, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 6/927922 (idx,y) = (6, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 7/927922 (idx,y) = (7, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 8/927922 (idx,y) = (8, 0)
file=[C:/Users/olala/AppData/Local/Temp/RtmpmoQIL8/file42d863176f35/data.files/file42d854f16ec7] 9/927922 (idx,y) = (9, 0)
prior mean=[0]
prior precision=[0.001]
compute=[1]
output:
summary=[1]
return.marginals=[1]
return.marginals.predictor=[0]
nquantiles=[3] [ 0.025 0.5 0.975 ]
ncdf=[0] [ ]
parse section=[14] name=[INLA.pardiso] type=[PARDISO]
inla_parse_pardiso...
section[INLA.pardiso]
verbose[0]
debug[0]
parallel.reordering[1]
nrhs[-1]
parse section=[13] name=[INLA.lp.scale] type=[LP.SCALE]
inla_parse_lp_scale...
section[INLA.lp.scale]
Index table: number of entries[9], total length[1856623]
tag start-index length
APredictor 0 928253
Predictor 928253 927922
spatial.Error in inla.inlaprogram.has.crashed() :
The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.
If this does not help, please contact the developers at <he...@r-inla.org>
Attached is the google drive linke to the data for the model
Thanks for your help.
Lanre
INLA help
May 16, 2022, 2:55:18 AM5/16/22
to Olanrewaju Lawal, R-inla discussion group
Can u upgrade to R 4.2, install the most recent testing version and set
inla.setOption(inla.mode=“experimental”)
after loading the package
From: r-inla-disc...@googlegroups.com <r-inla-disc...@googlegroups.com> on behalf of Olanrewaju Lawal <olanrewa...@uniport.edu.ng>
Sent: Monday, May 16, 2022 9:42:19 AM
To: R-inla discussion group <r-inla-disc...@googlegroups.com>
Subject: [r-inla] INLA Crashes around Index Table Entry
Sent: Monday, May 16, 2022 9:42:19 AM
To: R-inla discussion group <r-inla-disc...@googlegroups.com>
Subject: [r-inla] INLA Crashes around Index Table Entry
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