Antoine,
Chrono is unit-independent, so you should model using whatever units make more sense for your problem. What is important is to ensure consistency which means that you need to look for all possible parameters that have dimensions (even when not explicitly stated, such as the sphere swept radius for a collision mesh that you mentioned, the margins and envelopes in collision detection, etc.) and modify them accordingly.
From what you describe, your object models are in mm. From that, I assume they are relatively small which would suggest working at that scale throughout. Indeed, if you have very small objects (say you are modeling a mechanical watch) working in meters would require working with very small numbers which can lead to representation and approximation issues.
One last comment: you say that your models are in millimeters and that you have everything else set up in meters. From the code snippet you provide, it appears that you decided to modify the meshes. In that case, shouldn’t you use a scaling “MM_to_M”, that is 1e-3?
--Radu
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