ssPINE Pre-Assignment

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Maia Sraga

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Aug 8, 2025, 8:48:54 PMAug 8
to Automatic NMR assignment (I-PINE/ssPINE/RNA-PAIRS/MAGIC-ACT) user group
Hello,

When enabling the pre-assignment option during submissions to ssPINE, should all the peaks we want assigned be labelled in all the submitted spectra? Or is it sufficient to just have the NCACX peaks labelled?

Thank you,
Maia

Lee, Woonghee

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Aug 8, 2025, 8:50:51 PMAug 8
to Maia Sraga, Automatic NMR assignment (I-PINE/ssPINE/RNA-PAIRS/MAGIC-ACT) user group
Maia, just one is enough. If the given assignment makes sense, it will be prioritized. However, if that doesn't make sense at all from the data, it will still be neglected. 

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor & Data Science and Chemistry Certificate Program Director

Department of Chemistry
University of Colorado Denver
1151 Arapahoe St. (Science Bldg.) Rm 4128A (office), Rm 4128 (dry lab), Rm 4133 (wet lab)
Denver, CO 80217-3364, USA
Office: +1-303-315-7672

Shipping/Mailing Address:

Woonghee Lee
1201 5th St. UCD CHEM-194
P.O. Box 173364 (USPS)
Denver, CO 80204, USA

From: pinenmr-u...@googlegroups.com <pinenmr-u...@googlegroups.com> on behalf of Maia Sraga <maia.cy...@gmail.com>
Sent: Friday, August 8, 2025 6:48:53 PM
To: Automatic NMR assignment (I-PINE/ssPINE/RNA-PAIRS/MAGIC-ACT) user group <pinenmr-u...@googlegroups.com>
Subject: ssPINE Pre-Assignment
 
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