2. Then I did the following two steps to get the KO metageonomic prediction table, which are shown in the tutorial.
$qiime tools export --input-path ko_metagenome.qza --output-path ko_output &
$biom convert -i feature-table.biom -o feature-table_ko.biom.tsv --to-tsv &
3. Then I found the generated table only has KO numbers but no name or description.
I tried to add them by using the following command
$add_descriptions.py -i feature-table_ko.biom.tsv -o feature-table_ko_description.biom.tsv --custom_map_table /usr/local/miniconda3/envs/qiime2-2019.10/lib/python3.6/site-packages/picrust2/default_files/description_mapfiles/KEGG_pathways_info.tsv.gz &
$add_descriptions.py -i feature-table_ko.biom.tsv -o feature-table_ko_description.biom.tsv -m ko &
However, none of them work and gives me errors of Error: no function ids in input table are found in the provided mapfile
Is there a way that I can fix the problem?
Thanks a lot,
Hanyan Li
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Regards
Mashuk Siddiquee
E-mail: mashu...@gmail.com
Cheers,Gavin
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Regards
Mashuk Siddiquee
E-mail: mashu...@gmail.com
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