Error in Building PFLOTRAN

Saubhagya Singh Rathore

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Mar 1, 2021, 11:30:58 AM3/1/21

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Hi PFLOTRAN developers and users,

I am facing some difficulties in making PFLOTRAN on macOS (10.15.7). While making PFLOTRAN, preconditioner is throwing a rank mismatch error. I have attached two files that should provide relevant information. Any suggestions will be appreciated.

Files:

1) screen.log - error message while making PFLOTRAN

2) configure.log - PETSC configure file

Thanks

Saubhagya

screen.log

configure.log

Hammond, Glenn E

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Mar 1, 2021, 8:46:58 PM3/1/21

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Can anyone with macOS (10.15.7) or later successfully compile the code or replicate this issue?

Glenn

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Kewei Chen

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Mar 1, 2021, 10:52:36 PM3/1/21

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I compiled PFLOTRAN on macOS(10.15.6, Catalina) successfully. Not sure about macOS10.15.7.

Kewei

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Peter Lichtner

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Mar 2, 2021, 11:00:39 AM3/2/21

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I am using Big Sur (11.2.2). I get a lot of mismatch warnings but they seem to do no harm. For

preconditioner_cpr.F90 it compiles fine (note I am using petsc 3.14.2):

/Users/lichtner/pflotran/petsc-3.14.2/petsc-3.14.2-BigSur/bin/mpif90 -o preconditioner_cpr.o -c -O3 -I/Users/lichtner/pflotran/petsc-3.14.2/include -I/Users/lichtner/pflotran/petsc-3.14.2/petsc-3.14.2-BigSur/include -I/opt/X11/include -I. `pwd`/preconditioner_cpr.F90

/Users/lichtner/pflotran/petsc-3.14.2/petsc-3.14.2-BigSur/bin/mpif90 -o simulation_aux.o -c -O3 -I/Users/lichtner/pflotran/petsc-3.14.2/include -I/Users/lichtner/pflotran/petsc-3.14.2/petsc-3.14.2-BigSur/include -I/opt/X11/include -I. `pwd`/simulation_aux.F90

/Users/lichtner/pflotran/petsc-3.14.2/petsc-3.14.2-BigSur/bin/mpif90 -o option.o -c -O3 -I/Users/lichtner/pflotran/petsc-3.14.2/include -I/Users/lichtner/pflotran/petsc-3.14.2/petsc-3.14.2-BigSur/include -I/opt/X11/include -I. `pwd`/option.F90

/Users/lichtner/pflotran/pflotran_v3.0/src/pflotran/option.F90:1174:21:

1174 | call MPI_Allreduce(temp_real_in,temp_real_out,TWO_INTEGER_MPI, &

| 1

......

1206 | call MPI_Allreduce(value,temp_real,ONE_INTEGER_MPI,MPI_DOUBLE_PRECISION, &

| 2

Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1)

/Users/lichtner/pflotran/pflotran_v3.0/src/pflotran/option.F90:655:21:

655 | call MPI_Allreduce(MPI_IN_PLACE,option%error_while_nonblocking, &

| 1

......

1206 | call MPI_Allreduce(value,temp_real,ONE_INTEGER_MPI,MPI_DOUBLE_PRECISION, &

| 2

Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(8)).

/

For fortran compiler I have:

gfortran --version

GNU Fortran (GCC) 10.2.0

This is free software; see the source for copying conditions. There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

…Peter

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Hammond, Glenn E

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Mar 2, 2021, 10:48:25 PM3/2/21

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Saubhagya,

Which compiler are you using: mpif90 --version

Also, you might try PETSc v3.14.

Glenn

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Sent: Monday, March 1, 2021 8:31 AM
To: pflotran-users <pflotra...@googlegroups.com>
Subject: [pflotran-users: 6164] Error in Building PFLOTRAN

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Saubhagya Singh Rathore

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Mar 3, 2021, 3:30:35 PM3/3/21

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Thanks Glenn.

Compiler is GNU Fortran (Homebrew GCC 10.2.0) 10.2.0. I will try with PETSc v3.14. The problem could be due to multiple compilers available on my system. I will try to provide a compiler path explicitly.

Thanks

Saubhagya

Saubhagya Singh Rathore

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Mar 4, 2021, 3:24:22 PM3/4/21

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My solver related error seems to be solved, however I am getting another error. I could not figure out a way by looking into pmc_subsurface.F90 file. Any help would be appreciated.

/Users/7s2/Installations/pflotran/src/pflotran/pmc_subsurface.F90:463:30:

463 | realization,ierr);CHKERRQ(ierr)
| 1
Error: Explicit interface required for polymorphic argument at (1)
/Users/7s2/Installations/pflotran/src/pflotran/pmc_subsurface.F90:463:30:

317 | this%pm_ptr, &
| 2
......
463 | realization,ierr);CHKERRQ(ierr)
| 1
Error: Type mismatch between actual argument at (1) and actual argument at (2) (CLASS(__class_3CD8613_p)/TYPE(pm_base_pointer_type)).
make: *** [pmc_subsurface.o] Error 1

Thank you

Saubhagya

Hammond, Glenn E

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Mar 4, 2021, 4:40:50 PM3/4/21

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Saubhagya,

This is an issues that did not get cleanup in the released version of the code. It was fixed in the development version. I have pushed a fix to the released version. Once it is merged, you will need to ‘git checkout maint/v3.0’ which has all the bug fixes.

Michael,

Can you merge this once is passes CI?

Glenn

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Sent: Thursday, March 4, 2021 12:24 PM
To: pflotra...@googlegroups.com
Subject: Re: [pflotran-users: 6179] Error in Building PFLOTRAN

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My solver related error seems to be solved, however I am getting another error. I could not figure out a way by looking into pmc_subsurface.F90 file. Any help would be appreciated.

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Hammond, Glenn E

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Mar 4, 2021, 4:42:53 PM3/4/21

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https://bitbucket.org/pflotran/pflotran/pull-requests/401/removed-postcheck-setup-for-secondary

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Hammond, Glenn E

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Mar 5, 2021, 10:58:14 AM3/5/21

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Saubhagya,

The latest PR for maint/v3.0 should fix the issue.

git checkout maint/v3.0

git pull

Glenn

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Sent: Wednesday, March 3, 2021 12:30 PM
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Subject: Re: [pflotran-users: 6176] Error in Building PFLOTRAN

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Thanks Glenn.

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Saubhagya Singh Rathore

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Mar 8, 2021, 3:25:52 PM3/8/21

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Hi Glenn,

Thanks. The updated version of pflotran did fix the original issue however, I got another error. Related message is pasted below:

/Users/7s2/Installations/pflotran/src/pflotran/checkpoint_surface.F90:398:32:

384 | call PetscBagRegisterReal(bag,header%surf_flow_time,0.d0, &

| 2

......

398 | call PetscBagRegisterReal(bag,header%subsurf_surf_coupling,0, &

| 1

Error: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/REAL(8)).

make: *** [checkpoint_surface.o] Error 1

I fixed it by changing PetscBagRegisterReal in line 398 to PetscBagRegisterInt. However, I am getting a different error related to unavailability of symbols in architecture. Screen log file attached with this email. I could not think of any way to resolve this issue. Any guidance will be appreciated.

Thanks

Saubhagya

screen.log

Kris Kuhlman

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Mar 8, 2021, 4:20:41 PM3/8/21

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FYI, the issues are because you are using the newest version of gfortran (v10). Switching to an older version of gfortran (~v8), you should not have these issues.

Hammond, Glenn E

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Mar 9, 2021, 8:04:53 PM3/9/21

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I have fixed the bug below in maint/v3.0. This file was removed from master over a month ago. Regarding the compiler issues, I would follow Kris’ advice on using an older compiler.

Glenn

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Saubhagya Singh Rathore

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Mar 10, 2021, 8:23:13 AM3/10/21

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Thank you Kris and Glenn. Thank you for fixing the bug, that issue is resolved. I am attempting to build using gfortran v8 now.

Regards

Saubhagya

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