data source links for pathways in PathwayCommons12.All.uniprot.gmt

[Joe Tym]

hi

I'm currently looking at this file downloaded from the ftp site:

PathwayCommons12.All.uniprot.gmt

Some of the data sources :

INOH

NCI Curated Human Pathways from PID (final); 27-Jul-2015.
NetPath 12/2011.

Have source links like this:

http://pathwaycommons.org/pc12/Pathway_819fc41447fd8157290d15ad1c496297

Is there anyway to link these to something more user-friendly like a pathway diagram, as it is for the other data sources in this file ?

Thanks

Joe

[Jeffrey Wong]

You can append the link (aka 'uri') to the end of this url and view it in a browser: 

https://apps.pathwaycommons.org/pathways?uri=

For example, https://apps.pathwaycommons.org/pathways?uri=http://pathwaycommons.org/pc12/Pathway_819fc41447fd8157290d15ad1c496297 

Jeff

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[Igo -]

In order to have (or try to make) a pathway URI that mean something or point to a useful (preferably original, authors') diagram, the original data source should provide standard resolvable identifiers, which probably wasn't the case with INOH (you can find and check the original data files that we integrated into Pathway Commons db). For example, Reactome does have stable pathway IDs, and so we can have e.g. "http://identifiers.org/reactome/R-HSA-9006335". Also you can check the XRefs of a pathway, which may contain some useful IDs. (Pathway Commons project and data are not actively maintained anymore, sorry; and many of the pathway data sources we integrated were also old/unmaintained since long ago.)
Here are a couple of related app links, e.g., 
https://apps.pathwaycommons.org/search?q=EPO%20signaling%20pathway&type=Pathway - which leads to - 

https://apps.pathwaycommons.org/pathways?uri=http%3A%2F%2Fpathwaycommons.org%2Fpc12%2FPathway_819fc41447fd8157290d15ad1c496297

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[Joe Tym]

hi,

That seems to work very well, thanks very much for your help.

Joe