ERROR PARTITIONFINDER IN CIPRES : Exiting without processing (because of the -c/--check-only option

[Angie Tovar]

HEY GUYS

I HAVE A PROBLEM FOR RUN PARTITIONFINDER IN CIPRES, ATTACHED MY CFG SCRIPT

## MODELS OF EVOLUTION: all | allx | mrbayes | beast | gamma | gammai | <list> ##

models = all;

# MODEL SELECCTION: AIC | AICc | BIC #

model_selection = aicc;

## DATA BLOCKS: see manual for how to define ##

[data_blocks]

12S = 1-731;

16S = 732-1268;

COI_pos1 = 1269-1843\3;

COI_pos2 = 1270-1843\3;

COI_pos3 = 1271-1843\3;

CYTB_pos1 = 1844-2508\3;

CYTB_pos2 = 1845-2508\3;

CYTB_pos3 = 1846-2508\3;

RAG1_pos1 = 2509-3075\3;

RAG1_pos2 = 2510-3075\3;

RAG1_pos3 = 2511-3075\3;

TYR_pos1 = 3076-3482\3;

TYR_pos2 = 3077-3482\3;

TYR_pos3 = 3078-3482\3;

## SCHEMES, search: all | user | greedy | rcluster | rclusterf | kmeans ##

[schemes]

search = greedy;

IN CYPRESS THIS ERROR COMES OUT 

[Mark Miller]

Hi Angie,

I had a look at the job run. It looks as though the "just check the config file" option was checked in the interface.

Here is the command line:

partitionfinder2_2.1.1_comet python /projects/ps-ngbt/opt/comet/partionfinder2/partitionfinder-2.1.1/PartitionFinder.py --processes=8 -c --rcluster-percent=10.0

Please check and make sure that box is unchecked. If it is unchecked, please do report it to me via the cipres bug tracker.

Best,

Mark

[Angie Tovar]

Thank you, I managed to run the program

Best Regards

ATO

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Estudiantes Lic. Biología. Universidad Distrital Francisco José de Caldas, Bogotá,Colombia.

Grupo de Biodiversidad de Alta Montaña. Universidad Distrital Francisco José de Caldas, Bogotá, Colombia.

Biom|ics Lab, Universidad de los Andes, Bogotá, Colombia.