How can I download the OncoTree?

[Douglas]

Hi everyone,

This is likely a bit of a silly question, and I imagine there is a straightforward way to do this, but I was wondering if someone could explain to me how I could download the latest Oncotree in an Excel file? What I would like is a file with the variables as column, the first being the tissue type, the second being the parent disease ontology, the third being the daughter ontology, etc. Since the latest OncoTree has 706 tumor types, this file would have 706 rows. Any assistance would be appreciated, and apologies for asking such a basic question.

Thank you!

Douglas

[Nikolaus Schultz]

Hi Douglas,

The link to that table is a bit hidden - we will add a button somewhere more prominent to link to the file.

In the meantime, you can download the file from this link:

http://oncotree.mskcc.org/api/tumor_types.txt

Niki.

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[Douglas Mata]

Thanks so much!

On Tuesday, August 20, 2019 at 5:53:26 PM UTC-4, Nikolaus Schultz wrote:

Hi Douglas,

The link to that table is a bit hidden - we will add a button somewhere more prominent to link to the file.

In the meantime, you can download the file from this link:

http://oncotree.mskcc.org/api/tumor_types.txt

Niki.

On Aug 20, 2019, at 12:48 PM, Douglas <dougla...@gmail.com> wrote:

Hi everyone,

This is likely a bit of a silly question, and I imagine there is a straightforward way to do this, but I was wondering if someone could explain to me how I could download the latest Oncotree in an Excel file? What I would like is a file with the variables as column, the first being the tissue type, the second being the parent disease ontology, the third being the daughter ontology, etc. Since the latest OncoTree has 706 tumor types, this file would have 706 rows. Any assistance would be appreciated, and apologies for asking such a basic question.

Thank you!

Douglas

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