ICD-O-3 to OncoTree Mapping

[Sidney Smith]

Hello! Could you please provide the full ICD-O-3 site and histology mapping to OncoTree? The lookup available on the website collapses anatomic and histologic subtypes (i.e. C18.2 Ascending Colon gets group into C18.9 Colon NOS) making it difficult to map to Cancer Registry data. 

Thank you!

Sidney

[ritika...@gmail.com]

Hi Sidney,

Can you send me a screenshot or link of where you are searching for this?

Thanks,

Ritika

[Sidney Smith]

Hi Ritika,

Thank you so much for looking into this. Here is the link: oncotree/scripts/ontology_to_ontology_mapping_tool/ontology_mappings.txt at master · cBioPortal/oncotree · GitHub

Best,

Sidney

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[ritika...@gmail.com]

Thanks Sidney,

We are hoping to update and modify this but this will take some time to refresh. Is there a tumor type you are working on, we can try getting those updated for your sooner?

Ritika

[Sidney Smith]

Hi Ritika,

We will need all cancer types, but I think Breast and Colorectal will be good to prioritize first. 

Thank you very much,

Sidney

Sent from my iPhone

On Nov 20, 2024, at 6:44 AM, ritika...@gmail.com <ritika...@gmail.com> wrote:

Thanks Sidney,

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