Export/Import Identifiers and Mappings

[clsamc...@gmail.com]

Hello

I am trying to launch a new instance of Opal. Our current instance has 526 identifier mappings and 152274 system identifiers. As far as I can tell, there is no means to bulk import identifiers and mappings. Am I maybe missing something?

Thanks.

[Yannick Marcon]

Hi

There are several options:

* use the web interface: Administration > Identifiers Mappings and then select Import Identifiers

* use the import-ids-map command line

Regards

Yannick

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[CLSA IT]

Hi Yannick,

Maybe I'm misunderstanding, but for the import-ids-map command line I would have to run it for each mapping and the associated identifiers, correct?

-- 
Sean Hurley
Systems Administrator
Canadian Longitudinal Study on Aging (CLSA)
Étude longitudinale canadienne sur le vieillissement (ÉLCV)

Mobile/Text: 289-700-1606
Email: shu...@mcmaster.ca

McMaster University
McMaster Innovation Park
175 Longwood Rd. S. Suite 309A
Hamilton, ON L8P 0A1

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[Ramin H.A.]

Hi,

If you have several different types you could always use another Opal Python Command to list all your mapping types and then use the mentioned import command for each:

Example:

>opal rest -o  https://opal-demo.obiba.org /identifiers/tables -u administrator -p password -j
[
  {
    "datasourceName": "opal-keys",
    "entityType": "Dummy",
    "link": "/datasource/opal-keys/table/Dummy",
    "name": "Dummy",
    "status": "READY",
    "timestamps": {
      "created": "2023-10-11T15:41:33.001Z",
      "lastUpdate": "2023-10-11T15:41:33.001Z"
    }
  },
  {
    "datasourceName": "opal-keys",
    "entityType": "Participant",
    "link": "/datasource/opal-keys/table/keys",
    "name": "keys",
    "status": "READY",
    "timestamps": {
      "created": "2023-10-11T06:27:24.631Z",
      "lastUpdate": "2023-10-11T15:30:47.726Z"
    }
  }
]

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[CLSA IT]

Thank you.

-- 
Sean Hurley
Systems Administrator
Canadian Longitudinal Study on Aging (CLSA)
Étude longitudinale canadienne sur le vieillissement (ÉLCV)

Mobile/Text: 289-700-1606
Email: shu...@mcmaster.ca

McMaster University
McMaster Innovation Park
175 Longwood Rd. S. Suite 309A
Hamilton, ON L8P 0A1

To view this discussion on the web visit https://groups.google.com/d/msgid/obiba-users/CAMpqDgdeDjXB0MTh2KeGho9W%3Ddj9yBXrTewAXb2ZSLX%2BmHvZdQ%40mail.gmail.com.