Re: Sparky manu

Best,

Woonghee

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672

Shipping/Mailing Address:

Woonghee Lee

1201 5^th St. UCD CHEM-194

P.O. Box 173364 (USPS)

Denver, CO 80204, USA

From: "Yuji O. Kamatari" <kama...@gifu-u.ac.jp>
Date: Thursday, February 25, 2021 at 5:17 AM
To: Woonghee Lee <wh...@nmrfam.wisc.edu>
Cc: 鎌足雄司 <kama...@gifu-u.ac.jp>
Subject: Sparky manu

Dr. Woonghee Lee,

I have installed to NMRFAM-SPARKY to my computer (MacBook Pro (13-inch, M1, 2020)). Can I use the "NMRSTAR 3.1 to SPARKY” tool in my Mac?

In the Video Tutorials (https://www.youtube.com/watch?v=Fb3vCEsuPQw), "NMRSTAR 3.1 to SPARKY" tool exit. But, when I open Sparky in my Mac, no pull down menu appear in the NMRFAMS and Extensions menu. I also tried windows version of Sparky, but, I could not find "NMRSTAR 3.1 to SPARKY" tool, too.

I attached screenshots of my Mac and Windows machine.

Can I use the "NMRSTAR 3.1 to SPARKY" tool, if possible, in my Mac?

Thank you.

Dr. Yuji O. Kamatari

Division of Instrumental Analysis, Life Science Research Center, Gifu University,

1-1 Yanagido, Gifu, 501-1193, Japan

Tel: +81-58-293-3900,

Email: kama...@gifu-u.ac.jp

Lee, Woonghee

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Feb 25, 2021, 11:25:12 AM2/25/21

to Yuji O. Kamatari, nmr-s...@googlegroups.com

Dear Yuji,

I missed something in my previous email.

In recent versions, the feature is in “Universal NMR formats” not in “Utiliies.”

Hope that helps.

Woonghee

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672

Shipping/Mailing Address:

Woonghee Lee

1201 5^th St. UCD CHEM-194

P.O. Box 173364 (USPS)

Denver, CO 80204, USA

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Lee, Woonghee

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Mar 1, 2021, 7:19:00 AM3/1/21

to Yuji O. Kamatari, 鎌足雄司, nmr-s...@googlegroups.com

Hi Yuji,

Please update XQuartz.

Poky will eventually replace. It will open up new capabilities with new technologies. Let's how it goes.

Cheers,

Woonghee

Get Outlook for Android

From: Yuji O. Kamatari <kama...@gifu-u.ac.jp>

Sent: Monday, March 1, 2021 12:22:40 AM
To: Lee, Woonghee <WOONGH...@UCDENVER.EDU>
Cc: 鎌足雄司 <kama...@gifu-u.ac.jp>; nmr-s...@googlegroups.com <nmr-s...@googlegroups.com>
Subject: Re: [NMR-SPARKY] Sparky manu

Dear Woonghee,

Thank you for your replay.

I could use the “Convert NMRSTAR 3.1 chemical shift to SPARKY resonance list file” in my old Mac. It is very useful. Thank you.

You are going to shift Sparky to Poky?

I tried the Poky, but I cannot start it in both M1 Mac and old Mac. Error message is below. I will use Sparky for a while, so to solve the Poky problem is not urgent. But I am happy if I can try it.

Thank you.

Yuji

——

Process: poky [7485]

Path: /Volumes/VOLUME/*/poky.app/Contents/MacOS/poky

Identifier: com.yourcompany.poky

Version: 0

Code Type: X86-64 (Native)

Parent Process: ??? [1]

Responsible: poky [7485]

User ID: 501

Date/Time: 2021-03-01 16:05:37.796 +0900

OS Version: Mac OS X 10.15.7 (19H524)

Report Version: 12

Anonymous UUID: 5567A483-88A0-D556-56A8-AA0C69CA9036

Sleep/Wake UUID: 16E42DEE-D22C-4D9F-8308-075B98BB00F5

Time Awake Since Boot: 10000 seconds

Time Since Wake: 19 seconds

System Integrity Protection: enabled

Notes: Translocated Process

Crashed Thread: 0

Exception Type: EXC_CRASH (SIGABRT)

Exception Codes: 0x0000000000000000, 0x0000000000000000

Exception Note: EXC_CORPSE_NOTIFY

Termination Reason: DYLD, [0x3] Wrong version

Application Specific Information:

dyld: launch, loading dependent libraries

Dyld Error Message:

Library not loaded: /opt/X11/*/libX11.6.dylib

Referenced from: /Volumes/VOLUME/*/poky.app/Contents/MacOS/poky

Reason: Incompatible library version: poky requires version 11.0.0 or later, but libX11.6.dylib provides version 10.0.0

Binary Images:

0x1001eb000 - 0x1004defff +com.yourcompany.poky (0) <E0AC8904-E7DA-34D2-B661-9CC0ED95EDDA> /var/folders/*/poky.app/Contents/MacOS/poky

0x100575000 - 0x100758ff7 +libpython3.7m.dylib (0) <10E72354-B49D-3E2C-9898-231688810F22> /var/folders/*/poky.app/Contents/Frameworks/libpython3.7m.dylib

0x10080b000 - 0x100930ffb +libtcl8.6.dylib (8.6.8 - 8.6.8) <2482C58E-F209-3A0D-AD87-93984A18E413> /var/folders/*/poky.app/Contents/Frameworks/tcl-tk-x11/lib/libtcl8.6.dylib

0x100968000 - 0x100a3dfff +libtk8.6.dylib (8.6.8 - 8.6.8) <841BC240-4CF1-3A83-B74F-2ECCBF8C9960> /var/folders/*/poky.app/Contents/Frameworks/tcl-tk-x11/lib/libtk8.6.dylib

0x109613000 - 0x1096a4f47 dyld (750.6) <326C6480-04F4-3164-A363-53079A148E2F> /usr/lib/dyld

———

2021/02/26 1:24、Lee, Woonghee <WOONGH...@UCDENVER.EDU>のメール:

Lee, Woonghee

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Mar 1, 2021, 9:59:31 AM3/1/21

to Yuji O. Kamatari, nmr-s...@googlegroups.com

That’s a great news.

I have to put that error message and solution on FAQ because this must be a recurring question.

Poky have started!

Thank you for your advice.

Yuji

2021/03/01 21:18、Lee, Woonghee <WOONGH...@UCDENVER.EDU>のメール:

Hi Yuji,

Please update XQuartz.

Poky will eventually replace. It will open up new capabilities with new technologies. Let's how it goes.

Cheers,

Woonghee

Get Outlook for Android

From: Yuji O. Kamatari <kama...@gifu-u.ac.jp>
Sent: Monday, March 1, 2021 12:22:40 AM
To: Lee, Woonghee <WOONGH...@UCDENVER.EDU>
Cc: ę`×ćŠŪĖ¾ <kama...@gifu-u.ac.jp>; nmr-s...@googlegroups.com <nmr-s...@googlegroups.com>
Subject: Re: [NMR-SPARKY] Sparky manu

Dear Woonghee,

Thank you for your replay.

I could use the ”°Convert NMRSTAR 3.1 chemical shift to SPARKY resonance list file”± in my old Mac. It is very useful. Thank you.

You are going to shift Sparky to Poky?

I tried the Poky, but I cannot start it in both M1 Mac and old Mac. Error message is below. I will use Sparky for a while, so to solve the Poky problem is not urgent. But I am happy if I can try it.

Thank you.

Yuji

”Ŗ”Ŗ

”Ŗ”Ŗ”Ŗ

2021/02/26 1:24”¢Lee, Woonghee <WOONGH...@UCDENVER.EDU>¤Ī„į©`„ė:

Lee, Woonghee

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Mar 8, 2021, 4:03:42 PM3/8/21

to Patrick van der Wel, NMR POKY/SPARKY USER GROUP

Hi Patrick,

I strive to accomplish 100% compatibility between POKY and SPARKY until everybody moves to POKY. You can just use as it is. It is a good point. I will put that in FAQ.

Cheers,

Woonghee

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672

Shipping/Mailing Address:

Woonghee Lee

1201 5^th St. UCD CHEM-194

P.O. Box 173364 (USPS)

Denver, CO 80204, USA

From: Patrick van der Wel <pcav...@fastmail.fm>
Date: Monday, March 8, 2021 at 2:01 PM
To: "Lee, Woonghee" <WOONGH...@UCDENVER.EDU>
Subject: Re: [NMR-SPARKY] Sparky manu

Hi!

Me again… it worked! I now have POKY running. Thanks!

A question:

- what is the best advice for using POKY with an old Sparky project and files? Should I start copying PROJ, SAVE etc files to the POKY folders? Or is there a better way (or a risk if due to incompatibilities in either SPARKY or POKY - i.e. will POKY make changes that break compatibility with SPARKY?)

(I was surprised to not see this discussed on the site or in the FAQ. Perhaps worth adding?)

Best wishes,

Patrick

On 8 Mar 2021, at 16:54, Lee, Woonghee <WOONGH...@UCDENVER.EDU> wrote:

Hopefully the same reason!

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672

woongh...@ucdenver.edu

https://sites.google.com/view/wlee-group

https://poky.clas.ucdenver.edu

https://clas.ucdenver.edu/chemistry/woonghee-lee

Shipping/Mailing Address:

Woonghee Lee

1201 5^th St. UCD CHEM-194

P.O. Box 173364 (USPS)

Denver, CO 80204, USA

From: Patrick van der Wel <pcav...@fastmail.fm>
Date: Monday, March 8, 2021 at 8:05 AM
To: "Lee, Woonghee" <WOONGH...@UCDENVER.EDU>
Subject: Re: [NMR-SPARKY] Sparky manu

Thanks! I will have try.

(Indeed I also see the older sparky now failing to work. hopefully this will be the fix!)

Patrick

On 8 Mar 2021, at 15:48, Lee, Woonghee <WOONGH...@UCDENVER.EDU> wrote:

Hi Patrick,

XQuartz is putting out a new release every other week nowadays and it is missing something in the installer. I think it is similar to this issue for the person who has used old XQuartz before:https://github.com/XQuartz/XQuartz/issues/97

/opt/X11 needs to be deleted before installing XQuartz 2.8.0_rc2.

Hope this helps.

Best,

Woonghee

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672

woongh...@ucdenver.edu

https://sites.google.com/view/wlee-group

https://poky.clas.ucdenver.edu

https://clas.ucdenver.edu/chemistry/woonghee-lee

Shipping/Mailing Address:

Woonghee Lee

1201 5^th St. UCD CHEM-194

P.O. Box 173364 (USPS)

Denver, CO 80204, USA

From: Patrick van der Wel <pcav...@fastmail.fm>
Date: Monday, March 8, 2021 at 7:37 AM
To: "Lee, Woonghee" <WOONGH...@UCDENVER.EDU>
Subject: Re: [NMR-SPARKY] Sparky manu

Hi,

I haven’t seen that error before. Have you worked around with the permission thing?

Yes. I was able to get around that.

Full disk access needs to be given to poky, sh, launchd_startx… (I highly suspect this)

I tried adding all of these, except for “sh”. Don’t know how to add that...

Also, XQuartz needs to be installed in regular directories (/opt/X11)

Yes, it is.

Patrick

Lee, Woonghee

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Mar 8, 2021, 4:06:42 PM3/8/21

to Patrick van der Wel, NMR POKY/SPARKY USER GROUP

Hi Patrick,

You don’t have to. You can just set working directory to there. File -> Set working directory. That is the same as “RD” in NMRFAM-SPARKY and somewhat similar to setting SPARKYHOME in UCSF-SPARKY. You don’t have to copy to new directories.

Cheers,

Woonghee

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672

Shipping/Mailing Address:

Woonghee Lee

1201 5^th St. UCD CHEM-194

P.O. Box 173364 (USPS)

Denver, CO 80204, USA

From: Patrick van der Wel <pcav...@fastmail.fm>

Date: Monday, March 8, 2021 at 2:05 PM
To: "Lee, Woonghee" <WOONGH...@UCDENVER.EDU>

Cc: NMR POKY/SPARKY USER GROUP <nmr-s...@googlegroups.com>
Subject: Re: [NMR POKY/SPARKY] [NMR-SPARKY] Sparky manu

Since POKY and SPARKY default to different folders, a question is whether I should just copy all content from SPARKY home to POKY home? What is your advice?

Patrick

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stefano ciurli

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Mar 26, 2021, 4:57:00 PM3/26/21

to Lee, Woonghee, NMR POKY/SPARKY USER GROUP

Hello, I made the big move and upgraded my OS X to Big Sur.

POKY works fine, after installing XQuartz (after removing /opt/X11 and reinstalling, actually).

Since I would still like to be able to use SPARKY as well, I tried to install the software following the give instructions, but I get these error messages and eventually no files are in the /Applications/nmrfam-sparky-mac folder.

Hints?

Stefano

 $ sudo python ./install.py

 or with root account

 # python ./install.py

Check if old version exists...

rm -rf /Applications/nmrfam-sparky-mac

Start installation...

mkdir /Applications/nmrfam-sparky-mac

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

cp -rf /Applications/nmrfam-sparky-mac/*.app /Applications/nmrfam-sparky-mac/

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

cp: /Applications/nmrfam-sparky-mac/*.app: No such file or directory

cd /Applications/nmrfam-sparky-mac/NMRFAM-SPARKY.app/Contents/Resources/python; python -m compileall .

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

sh: line 0: cd: /Applications/nmrfam-sparky-mac/NMRFAM-SPARKY.app/Contents/Resources/python: No such file or directory

job-working-directory: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

Traceback (most recent call last):

  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/runpy.py", line 163, in _run_module_as_main

    mod_name, _Error)

  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/runpy.py", line 102, in _get_module_details

    loader = get_loader(mod_name)

  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pkgutil.py", line 462, in get_loader

    return find_loader(fullname)

  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pkgutil.py", line 473, in find_loader

    loader = importer.find_module(fullname)

  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pkgutil.py", line 181, in find_module

    path = [os.path.realpath(self.path)]

  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/posixpath.py", line 383, in realpath

    return abspath(path)

  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/posixpath.py", line 371, in abspath

    cwd = os.getcwd()

OSError: [Errno 2] No such file or directory

Remove warnings...

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

xattr: No such file: /Applications/nmrfam-sparky-mac/NMRFAM-SPARKY.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

xattr: No such file: /Applications/nmrfam-sparky-mac/pine2sparky.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

xattr: No such file: /Applications/nmrfam-sparky-mac/easy_pipe2ucsf.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

xattr: No such file: /Applications/nmrfam-sparky-mac/easy_bruk2ucsf.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

xattr: No such file: /Applications/nmrfam-sparky-mac/easy_ucsfdata.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

xattr: No such file: /Applications/nmrfam-sparky-mac/ndpplot.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

xattr: No such file: /Applications/nmrfam-sparky-mac/PonderosaAnalyzer.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

xattr: No such file: /Applications/nmrfam-sparky-mac/PonderosaClient.app

Gatekeeper pass...

spctl --remove --label "NMRFAM-SPARKY.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --add --label "NMRFAM-SPARKY.app" /Applications/nmrfam-sparky-mac/NMRFAM-SPARKY.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

/Applications/nmrfam-sparky-mac/NMRFAM-SPARKY.app: invalid API object reference

spctl --disable --label "NMRFAM-SPARKY.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --remove --label "pine2sparky.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --add --label "pine2sparky.app" /Applications/nmrfam-sparky-mac/pine2sparky.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

/Applications/nmrfam-sparky-mac/pine2sparky.app: invalid API object reference

spctl --disable --label "pine2sparky.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --remove --label "easy_pipe2ucsf.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --add --label "easy_pipe2ucsf.app" /Applications/nmrfam-sparky-mac/easy_pipe2ucsf.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

/Applications/nmrfam-sparky-mac/easy_pipe2ucsf.app: invalid API object reference

spctl --disable --label "easy_pipe2ucsf.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --remove --label "easy_bruk2ucsf.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --add --label "easy_bruk2ucsf.app" /Applications/nmrfam-sparky-mac/easy_bruk2ucsf.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

/Applications/nmrfam-sparky-mac/easy_bruk2ucsf.app: invalid API object reference

spctl --disable --label "easy_bruk2ucsf.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --remove --label "easy_ucsfdata.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --add --label "easy_ucsfdata.app" /Applications/nmrfam-sparky-mac/easy_ucsfdata.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

/Applications/nmrfam-sparky-mac/easy_ucsfdata.app: invalid API object reference

spctl --disable --label "easy_ucsfdata.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --remove --label "ndpplot.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --add --label "ndpplot.app" /Applications/nmrfam-sparky-mac/ndpplot.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

/Applications/nmrfam-sparky-mac/ndpplot.app: invalid API object reference

spctl --disable --label "ndpplot.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --remove --label "PonderosaAnalyzer.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --add --label "PonderosaAnalyzer.app" /Applications/nmrfam-sparky-mac/PonderosaAnalyzer.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

/Applications/nmrfam-sparky-mac/PonderosaAnalyzer.app: invalid API object reference

spctl --disable --label "PonderosaAnalyzer.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --remove --label "PonderosaClient.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

spctl --add --label "PonderosaClient.app" /Applications/nmrfam-sparky-mac/PonderosaClient.app

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

/Applications/nmrfam-sparky-mac/PonderosaClient.app: invalid API object reference

spctl --disable --label "PonderosaClient.app"

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

error: no matches for search or update operation

Please run NMRFAM-SPARKY in /Applications/nmrfam-sparky-mac.

Please cite the following paper:

  NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. Bioinformatics (2015) 31 (8): 1325-1327

Finished.

[MacBook-Pro:/Applications/nmrfam-sparky-mac] stefano% 

Lee, Woonghee

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Mar 26, 2021, 8:08:19 PM3/26/21

to stefano...@gmail.com, NMR POKY/SPARKY USER GROUP

Hi Stefano,

Are you running the script with sudo ?

Thanks,

Woonghee

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672

Shipping/Mailing Address:

Woonghee Lee

1201 5^th St. UCD CHEM-194

P.O. Box 173364 (USPS)

Denver, CO 80204, USA

From: <nmr-s...@googlegroups.com> on behalf of "stefano...@gmail.com" <stefano...@gmail.com>

Date: Friday, March 26, 2021 at 2:57 PM
To: "Lee, Woonghee" <woongh...@ucdenver.edu>
Cc: NMR POKY/SPARKY USER GROUP <nmr-s...@googlegroups.com>

--

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stefano ciurli

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Mar 26, 2021, 8:09:54 PM3/26/21

to Lee, Woonghee, NMR POKY/SPARKY USER GROUP

Hello Woonghee,

as you can see from the text that I reported, yes, I used sudo.

Stefano

Lee, Woonghee

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Mar 26, 2021, 8:14:04 PM3/26/21

to stefano ciurli, NMR POKY/SPARKY USER GROUP

I think you are running the script inside of /Applications/nmrfam-sparky-mac or underneath. It should be run somewhere different. Because it recognizes something under as the old version and deletes. Then, you don’t have the thing to install. Bottomline is, unpack your package somewhere under your home directory not /Applications/…. And run the install.py.

Best,

Woonghee

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672

Shipping/Mailing Address:

Woonghee Lee

1201 5^th St. UCD CHEM-194

P.O. Box 173364 (USPS)

Denver, CO 80204, USA

From: <nmr-s...@googlegroups.com> on behalf of stefano ciurli <stefano...@gmail.com>

Date: Friday, March 26, 2021 at 6:10 PM
To: "Lee, Woonghee" <WOONGH...@UCDENVER.EDU>

To view this discussion on the web visit https://groups.google.com/d/msgid/nmr-sparky/5633AC51-B4B4-4AEC-9B8F-826C1CA64341%40gmail.com.

stefano ciurli

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Mar 26, 2021, 8:22:43 PM3/26/21

to Lee, Woonghee, NMR POKY/SPARKY USER GROUP

Hi Woonghee,

the software installed by following your advice. Thank you very much!

Stefano

Lee, Woonghee

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Mar 26, 2021, 8:23:24 PM3/26/21

to stefano ciurli, NMR POKY/SPARKY USER GROUP

Great to know it works!

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672

https://groups.google.com/g/nmr-sparky/c/QNGQJ4Qa_0o

Shipping/Mailing Address:

Woonghee Lee

1201 5^th St. UCD CHEM-194

P.O. Box 173364 (USPS)

Denver, CO 80204, USA

stefano ciurli

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Mar 27, 2021, 11:54:24 AM3/27/21

to Lee, Woonghee, NMR POKY/SPARKY USER GROUP

yes but now I see another problem: Sparky cannot read any of the spectra… apparently it does not recognise the path, even though I try to open the .save file:

Stefano

Lee, Woonghee

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Mar 27, 2021, 11:56:08 AM3/27/21

to stefano ciurli, NMR POKY/SPARKY USER GROUP

Hi Stefano,

Have you tried this?

Best,

Woonghee

--

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Professor

Department of Chemistry

University of Colorado Denver

1151 Arapahoe St. (Science Bldg.) Rm 4128A

Denver, CO 80217-3364, USA

Office: +1-303-315-7672