From looking at the schematics you provided in an earlier post about the flickering issue, it's probably caused by the SMPS (switched mode power supply) that provides the high voltage (around 175V) to the nixies. It's using a 34063, which can't drive a mosfet very well by itself: ideally you would add a PNP transistor to its gate to make sure it can switch off quickly. This would make it much more efficient, and therefore waste a lot less energy as heat. As before, you can see that the design for this clock is not really great, giving the issues you're finding.
Here's an example of a design that incorporates the PNP to switch off the mosfet quickly: