Hi Alexandre,
It is quite possible that none of your jobs is doing any database operation at that particular time when you are seeing 0 operations in mongostat results. They may be waiting for some resource or event for further processing.
Moreover, mongostat output provides the count of database operations such as insert, query, update, etc. and by default runs every one second. This may not reflect all the statistics such as lock queues, cursors, connections and storage engine level metrics. db.serverStatus() should be a better way of checking all statistics. You can use a small script to run the command repeatedly and see the results. mongod logs can also help in identifying the queries running at the time. For additional monitoring, please also read Monitoring for MongoDB.
If you still doubt that the mongodb server is waiting and not performing the operations, please also consider providing below details for better community help:
Regards
Ankur