Currently, no. This is a good issue I had not considered: The matpipe is just a way to link together multiple modular data frame transformers. I’ll add it as a issue todo to take of this.
However (in the meantime), each part of the automatminer pipeline can be used with essentially the same syntax as MatPipe (fit/transform/predict operations). You can just use the underlying parts by themselves in whatever order you want (not recommended but if you know what you're doing go for it). They accept a df as input and return a df as output, just like MatPipe. For example, initialize an AutoFeaturizer and TPOTAdaptor and run the fit/transform actions manually. Just make sure you are using fit/transform/predict correctly and things should be fine.
For example
af = AutoFeaturizer()
tpot = TPOTAdaptor()
training_df = af.fit_transform(training_df, "my_target_col")
tpot.fit(training_df, "my_target_col")
prediction_df = af.transform(prediction_df, "my_target_col")
tpot.predict(prediction_df, "my_target_col")
Check out the fit/transform methods of MatPipe for more tips on how to use the underlying AutoFeaturizer/MLAdaptor pieces.
Thanks,
Alex