Hello stumarcus,
Thanks for your message -- we are aware of the automatic differentiation feature in pymanopt, and we also think it's great.
Somehow, we didn't find any completely convincing AD solution in matlab though. Last summer, I had some success building a prototype of AD in Manopt using ADiMat. It worked, but the issue is that to get the derivative of a function, the toolbox actually connects to a distant server over the internet (once for each function file; then it's saved). Since that projects appears no longer to be maintained, this would create an undesirable dependency of manopt with a feature that might break at any point. So we decided not to make this public.
ADiGator was also on my list of packages to try; I do not remember what my conclusions were. I'll have another look. In the meantime, don't hesitate to share your input in that possible direction.
Best,
Nicolas