Erroe on line 100

[Juan Bravo]

Hey guys, i was doing ana analysis with the linkage mapper 2.0 Versios. But when the problem is whe the problm is going to star to draee the links. It just stop and say there is a problem on line 1000 and line 181

[John Gallo]

Hi Juan,

Try it with the latest version here https://linkagemapper.org/Downloads/   (currently 3.1.0)

If that still does not work please send the full error log ( a .txt file).

Thank you,

John

On Wed, Dec 11, 2024 at 2:14 PM Juan Bravo <coordinacion...@biotaconsultoria.com> wrote:

Hey guys, i was doing ana analysis with the linkage mapper 2.0 Versios. But when the problem is whe the problm is going to star to draee the links. It just stop and say there is a problem on line 1000 and line 181

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John A. Gallo, Ph.D.

Project Director

LinkageMapper.org

and

Senior Conservation Scientist

Conservation Biology Institute

[Juan Bravo]

Hi John,

I really appreciate you wrote to me to know about my problems witjh Linkage Mapper. I downloaded the last version but im still having problems. 

Im going to send you the txt fille

Thanks so much!

To view this discussion visit https://groups.google.com/d/msgid/linkage-mapper/CAEUWjEt5nQ6s2OwNZw7XpTyci-V0VRWY%2Bb0G%2BvHpBBCM1W7S7Q%40mail.gmail.com.

[John Gallo]

Hello Juan,

hmmm.

I'll assume you used the same input files for all three runs, correct?

So with v3.1 your error is right away and the error is "Python error on **line 2123** of lm_util.py in Linkage Mapper Version 3.1.0:

UnicodeEncodeError: 'ascii' codec can't encode character u'\xf3' in position 40: ordinal not in range(128)"

and with v2.0 the model gets close to the end before throwing this error "Python error on **line 100** of s4_refineNetwork.py in Linkage Mapper Version 2.0.0:

IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices"

My first suggestion is to make sure that your resistance surface does not have any null values within any of the cores.  If there are, change those to a value that makes the most sense ecologically and re-run.

Thanks,

John

To view this discussion visit https://groups.google.com/d/msgid/linkage-mapper/CAJ_UHV6DYAsU8bAifNbc1Hn52ihdBoM2RYXOChdgd0Wg_FeYmA%40mail.gmail.com.