Or is it possible for the parent job to check the status of the child jobs started by it, and "manually" restart the ones failing due to java.io.EOFException until they succeed?
Building remotely on instance-1 (tag1) in workspace /var/lib/jenkins/workspace/eval
[vmu-eval-single] $ /bin/sh -xe /tmp/jenkins4616924287086740166.sh
+ /path/to/evaluation-tool
FATAL: command execution failed
java.io.EOFException
at java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2681)
at java.io.ObjectInputStream$BlockDataInputStream.readShort(ObjectInputStream.java:3156)
at java.io.ObjectInputStream.readStreamHeader(ObjectInputStream.java:862)
at java.io.ObjectInputStream.<init>(ObjectInputStream.java:358)
at hudson.remoting.ObjectInputStreamEx.<init>(ObjectInputStreamEx.java:49)
at hudson.remoting.Command.readFrom(Command.java:140)
at hudson.remoting.Command.readFrom(Command.java:126)
at hudson.remoting.AbstractSynchronousByteArrayCommandTransport.read(AbstractSynchronousByteArrayCommandTransport.java:36)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:63)
Caused: java.io.IOException: Unexpected termination of the channel
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:77)
Caused: java.io.IOException: Backing channel 'instance-1' is disconnected.
at hudson.remoting.RemoteInvocationHandler.channelOrFail(RemoteInvocationHandler.java:214)
at hudson.remoting.RemoteInvocationHandler.invoke(RemoteInvocationHandler.java:283)
at com.sun.proxy.$Proxy78.isAlive(Unknown Source)
at hudson.Launcher$RemoteLauncher$ProcImpl.isAlive(Launcher.java:1144)
at hudson.Launcher$RemoteLauncher$ProcImpl.join(Launcher.java:1136)
at hudson.tasks.CommandInterpreter.join(CommandInterpreter.java:155)
at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:109)
at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:66)
at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:744)
at hudson.model.Build$BuildExecution.build(Build.java:206)
at hudson.model.Build$BuildExecution.doRun(Build.java:163)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:504)
at hudson.model.Run.execute(Run.java:1816)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:429)
FATAL: Unable to delete script file /tmp/jenkins4616924287086740166.sh
java.io.EOFException
at java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2681)
at java.io.ObjectInputStream$BlockDataInputStream.readShort(ObjectInputStream.java:3156)
at java.io.ObjectInputStream.readStreamHeader(ObjectInputStream.java:862)
at java.io.ObjectInputStream.<init>(ObjectInputStream.java:358)
at hudson.remoting.ObjectInputStreamEx.<init>(ObjectInputStreamEx.java:49)
at hudson.remoting.Command.readFrom(Command.java:140)
at hudson.remoting.Command.readFrom(Command.java:126)
at hudson.remoting.AbstractSynchronousByteArrayCommandTransport.read(AbstractSynchronousByteArrayCommandTransport.java:36)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:63)
Caused: java.io.IOException: Unexpected termination of the channel
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:77)
Caused: hudson.remoting.ChannelClosedException: Channel "unknown": Remote call on instance-eval-worker-25 failed. The channel is closing down or has closed down
at hudson.remoting.Channel.call(Channel.java:950)
at hudson.FilePath.act(FilePath.java:1069)
at hudson.FilePath.act(FilePath.java:1058)
at hudson.FilePath.delete(FilePath.java:1539)
at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:123)
at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:66)
at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:744)
at hudson.model.Build$BuildExecution.build(Build.java:206)
at hudson.model.Build$BuildExecution.doRun(Build.java:163)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:504)
at hudson.model.Run.execute(Run.java:1816)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:429)
Build step 'Execute shell' marked build as failure
Finished: FAILURE