In windows based Jenkins we have service for stop/start .
I assumed below is the place where it is taking the arguments i have added those to Jenkins.xml. here is complete xml. please let me know if i am adding at wrong place.
<service>
<id>jenkins</id>
<name>Jenkins</name>
<description>This service runs Jenkins continuous integration system.</description>
<env name="JENKINS_HOME" value="%BASE%"/>
<!--
if you'd like to run Jenkins with a specific version of Java, specify a full path to java.exe.
The following value assumes that you have java in your PATH.
-->
<executable>%BASE%\jre\bin\java</executable>
<arguments>-Xrs -Xmx256m -Dhudson.model.DirectoryBrowserSupport.CSP= -Dhudson.lifecycle=hudson.lifecycle.WindowsServiceLifecycle -jar "%BASE%\jenkins.war" --httpPort=8080</arguments>
<!--
interactive flag causes the empty black Java window to be displayed.
I'm still debugging this.
<interactive />
-->
<logmode>rotate</logmode>
<onfailure action="restart" />
</service>