These permissions have been effectively hidden (unless specifically enabled) since 2017-4-10 see ->
SECURITY-410). Work is underway to introduce a more sensible permission segregation that allows the delegation of limited administrative capabilities in a secure manner (see
https://github.com/jenkinsci/jep/pull/249), and it seems reasonable to officially begin to phase out the usage of these permissions.
If you want to retain the old, unsafe behavior, set the system property
hudson.security.GlobalMatrixAuthorizationStrategy.dangerousPermissions
to true.
The plugin retains permissions configured before upgrading, so
there should be no changes in behavior afterwards.