I'm not sure if there is a difference in part numbers between the standard and YEU engine builds, but I think your parts catalog should also go in the Resources section. I do know that Yanmar has changed numbers for some parts over the years, so that could be another reason for the differences you're seeing. I've found that
http://toadmarinesupply.com/ is a good resource for looking up Yanmar parts by number, both old and new. If you happen to look up a part by its old number, the website will show you the new number as well, which I think is a nice feature.
I've updated the Resources sections to include your catalog and also renamed the other catalog to identify it as the YEU version.