This is going to be a fun migration. As you probably know, NetApp has two sets of unrelated permissions for files shared via NFS and SMB. Isilon has only one set of permissions for each file and that can be POSIX or an ACL. A file with an ACL shared via NFS v3 will present an approximated set of POSIX permissions, but when a user attempts to access that file, their credentials will be checked against the full ACL. With POSIX permission files accessed via SMB you will see an ACL that matches the POSIX permissions.
So, for your migration you are going to have to choose to migrate either the ACL or the POSIX permissions, you cannot add both. The advantage is that users have exactly the same access rights to a file regardless of their access protocol.
Hopefully, you'll find that most files are either accessed via NFS or via SMB, not both, so it will be easy to decide which set of credentials to migrate for each dataset.
Good luck, and welcome to the future.
Al...