I'll try and answer these in order.
First, it's not a NetBoot DMG. It's a disk image that can be restored with asr. This is a common workflow for Imagr users, but not the only one. You can just install packages, just run scripts etc. It cannot take a random app (the install app) and know what to do with it. If you turn your installer into a package using COSXIP, imagr will happily ingest it (and I believe there is a section on the wiki about making this work - if there isn't, there should be).
Yes, running things at first boot is very different. Autodmg installs things to a different volume to the boot volume. Most payload free packages won'twork correctly and any poorly made packages that make assumptions about where they're being installed won't work either.
Rich's tool and imagr both use LoginLog to display their progress, so they will fight with each other. I personally wouldn't use both.
The input for all the NBI creation tools is merely needed for building the boot media (NetBoot / netinstall / whatever). No relation to what you install or restore.
I think this raises the point that the wiki could have a more generic "how pieces fit together" page. If anyone would like to take a punt at this in the list, please feel free! Otherwise this will need to wait until I next fly over the pond.
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