What version of IGV are you using (do help > about to find out), and also what genome assembly are you viewing?
I'm not sure I understand you correctly, could you send a screenshot of what you see after you search?
Thanks
Jim
That is curious, attached is what I see.
From your screenshot I infer you are using a Mac. Are you comfortable with a command terminal? If so try going to your "genomes" folder which is located at ~/.igv/genomes (~ means user home directory) and delete the "WS220.genome" file you find there. Then restart IGV and see if it looks the same. Deleting that file will force it to download a fresh copy, which it should be doing automatically.
Jim
Thanks
Jim
The earlier WS220 annotation was contributed to us by email from a user, it did not come from an official source that we could attribute. We periodically update the annotations for all hosted genomes, but normally do not change sources as in this instance. I will add the Ensemble annoation for this assembly to the "File > Load from server" menu so you can optionally load it. If you need it before I can get to it you can download the track from UCSC and load it through the file menu. Many of their files just work, but the surest way to do it is use the table browser and output as "bed" format.
Apologies for the confusion,
Jim
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