Is it present in the refseq set from UCSC? That is the set we
use for annotations.
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Is it present in the refseq set from UCSC? That is the set we use for annotations.
On 8/22/16 1:29 PM, Varun Gupta wrote:
Hi,--
I am using Zebra fish genome and was looking for the gene called ARSI, but IGV does not show this gene. Why so??
GENOME : GRCz10/danRer10
I looked into ensembl data base and it is present there.
Thanks
Regards
Varun
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There are various files ready for download here, many can be
loaded directly into IGV. If you give me a list of these files
you'd like I will try adding them, but don't say "all of them" my
time for this is limited:
http://hgdownload.cse.ucsc.edu/goldenPath/danRer10/database/
You can also use the table browser and extract annotations in
"bed" format. Be sure to name the file to end in ".bed".
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